CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621842_at

Gene name hypothetical protein LOC100256561

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1621842_at CB968661 hypothetical protein LOC100256561 - 3e-33 At3g02420 unknown protein S.X. H.G.
0.73 90.8 1622541_at CB342787 hypothetical protein LOC100258249 - 4e-35 At5g12190 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.67 87.9 1618114_s_at CB915270 hypothetical protein LOC100243282 - 6e-1 At1g27610 unknown protein S.X. H.G.
0.61 83.2 1622362_at CD802017 hypothetical protein LOC100254265 - 6e-34 At2g25760 protein kinase family protein S.X. H.G.
0.55 77.3 1616070_at BQ798090 hypothetical protein LOC100242617 - 3e-111 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) S.X. H.G.
0.36 50.7 1620482_at CF415268 hypothetical protein LOC100255975 - 1e+0 At1g28510 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.5 91.9 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 1618767_at CF210666 similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase - 5e-24 At1g73990 SPPA C.G. S.X.
0.02 1e-1 36 1614209_at CB345736 similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase - 1e+0 At3g43153 cAMP-dependent protein kinase inhibitor-related C.G. S.X.
0.02 6e-1 34 1620000_at CB003691 - - 9e-2 At5g37790 protein kinase family protein C.G. S.X.
0.02 6e-1 34 1607363_at CB003691 - - 9e-2 At5g37790 protein kinase family protein C.G. S.X.
0.02 6e-1 34 1607180_at CA816204 hypothetical protein LOC100266111 - 1e-56 At3g50000 CKA2 (CASEIN KINASE II, ALPHA CHAIN 2) C.G. S.X.
0.02 2e+0 32 1622164_at CB344821 hypothetical protein LOC100242849 - 6e-2 At1g05410 unknown protein C.G. S.X.
0.02 2e+0 32 1620206_at CF515519 - - 1e+0 At5g27150 NHX1 (NA+/H+ EXCHANGER) C.G. S.X.
0.02 2e+0 32 1620159_at CB343318 - - 3e-5 At2g44710 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e+0 32 1618000_at CD721411 - - 2e-55 At3g24180 catalytic/ glucosylceramidase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-33 143 Arabidopsis thaliana At3g02420 821152 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;POMF - - - C.G. S.X.
0.34 1e-45 184 Glycine max GmaAffx.90735.1.S1_at CF806460 - - 1e-28 At3g02420 unknown protein C.G. S.X.
0.03 9e-1 34 Hordeum vulgare HVSMEa0019B22r2_x_at HVSMEa0019B22r2 - - 2e+0 At4g17640 CKB2 C.G. S.X.
0.06 4e-3 44 Oryza sativa Os05g0589200 AK068666.1 - RNA polymerase, sigma subunit family protein 3e-1 At1g19930 kelch repeat-containing F-box family protein C.G. S.X.
0.30 4e-76 286 Populus trichocarpa PtpAffx.17757.1.S1_at CV273959 hypothetical protein - 3e-37 At3g02420 unknown protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.54575.1.A1_x_at CA679821 - - 6e-1 At3g24170 ATGR1 (glutathione-disulfide reductase) C.G. S.X.
0.06 2e-1 36 Zea mays Zm.14974.1.A1_at CF602682 hypothetical protein LOC100276645 - 2e+1 At5g42070 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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