Gene omics information

Query gene ID	1621836_at
Gene name	MADS-box protein 5
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	85.0	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	S.X.	H.G.	Please select
0.92	99.0	1610616_at	CB921212	hypothetical protein LOC100260773 /// hypothetical protein LOC100252365	-	5e-3	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	S.X.	H.G.	Please select
0.90	95.6	1611173_at	CB979091	hypothetical protein LOC100258969	-	1e+0	At3g25080	unknown protein	S.X.	H.G.	Please select
0.90	95.6	1614697_at	CB346214	hypothetical protein LOC100255962	-	5e+0	At5g07550	GRP19 (GLYCINE-RICH PROTEIN 19)	S.X.	H.G.	Please select
0.88	95.4	1614771_at	CB346222	hypothetical protein LOC100242179	-	1e+0	At5g62200	embryo-specific protein-related	S.X.	H.G.	Please select
0.87	95.2	1615925_at	BQ793198	hypothetical protein LOC100260124	-	3e-4	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	S.X.	H.G.	Please select
0.85	94.9	1621346_at	CB978597	hypothetical protein LOC100263108	-	8e-2	At1g74440	unknown protein	S.X.	H.G.	Please select
0.85	94.9	1613191_at	CB348359	hypothetical protein LOC100254511	-	8e-2	At3g20850	proline-rich family protein	S.X.	H.G.	Please select
0.83	94.6	1620307_at	CB348708	hypothetical protein LOC100264814	-	2e-10	At2g33380	RD20 (RESPONSIVE TO DESSICATION 20)	S.X.	H.G.	Please select
0.81	93.7	1617980_at	CB346475	-	-	8e-1	At5g66800	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.3	100.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
16.9	99.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
14.5	99.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
14.1	99.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
13.8	99.8	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.9	99.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.1	99.7	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.6	99.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.7	99.3	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.5	99.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-26	119	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.05	7e-16	83	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please select
0.12	6e-10	63	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.04	6e-7	54	1614123_at	CF373459	PISTILLATA-like MADS-box protein-like	-	8e-9	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please select
0.02	6e-4	44	1618509_at	CF372501	flowering-related B-class MADS-box protein APETALA3	-	4e-11	At3g54340	AP3 (APETALA 3)	C.G.	S.X.	Please select
0.02	1e-1	36	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.02	6e-1	34	1615924_at	CD715417	-	-	2e-8	At3g09970	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.05	6e-1	34	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	C.G.	S.X.	Please select
0.02	6e-1	34	1612115_at	CD715417	hypothetical protein LOC100261391	-	2e-8	At3g09970	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	2e-9	63	Arabidopsis thaliana	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	4e-36	153	Glycine max	Gma.6760.1.S1_at	BU544178	-	-	1e-42	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.20	2e-17	89	Hordeum vulgare	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.20	2e-14	81	Oryza sativa	Os12g0207000	AY551912.1	-	Transcription factor	9e-21	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	1e-88	327	Populus trichocarpa	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	3e-18	93	Triticum aestivum	Ta.12700.1.S1_at	AB084577.1	MADS box transcription factor	-	3e-6	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.18	4e-9	61	Zea mays	Zm.270.1.S1_at	U31522.1	hypothetical protein LOC100216659	-	8e-19	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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