Gene omics information

Query gene ID	1621827_at
Gene name	similar to flowering locus C-like MADS-box protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	S.X.	H.G.	Please select
0.43	61.5	1621497_at	CB971307	hypothetical protein LOC100242262	-	2e-3	At1g72770	HAB1 (HOMOLOGY TO ABI1)	S.X.	H.G.	Please select
0.42	60.1	1619312_a_at	CD801019	hypothetical protein LOC100255878 /// hypothetical protein LOC100245575	-	2e-75	At4g37550	formamidase, putative / formamide amidohydrolase, putative	S.X.	H.G.	Please select
0.35	48.5	1621407_at	CD801019	hypothetical protein LOC100255878	-	2e-75	At4g37550	formamidase, putative / formamide amidohydrolase, putative	S.X.	H.G.	Please select
0.29	37.7	1615467_at	CF511291	hypothetical protein LOC100245445	-	1e-13	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	S.X.	H.G.	Please select
0.24	28.7	1619954_at	CB974333	hypothetical protein LOC100257028	-	7e-16	At5g07830	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	S.X.	H.G.	Please select
0.17	18.2	1614963_at	CF210984	hypothetical protein LOC100266167	-	8e-12	At1g01950	armadillo/beta-catenin repeat family protein / kinesin motor family protein	S.X.	H.G.	Please select
0.13	13.3	1619654_at	CF415234	hypothetical protein LOC100261504	-	2e-12	At5g19290	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	99.1	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-4	44	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.03	1e-2	40	1619977_at	BQ794993	hypothetical protein LOC100251508	-	3e-27	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.02	4e-2	38	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please select
0.02	2e-1	36	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.02	3e+0	32	1621960_at	CF515867	hypothetical protein LOC100251275	-	4e+0	At5g51090	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	C.G.	S.X.	Please select
0.02	3e+0	32	1620267_at	CB972336	hypothetical protein LOC100264696	-	7e-9	At5g20140	SOUL heme-binding family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1619933_s_at	CB974435	-	-	2e+0	At2g18969	-	C.G.	S.X.	Please select
0.02	3e+0	32	1619646_at	CB341424	hypothetical protein LOC100261680	-	4e+0	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-11	69	Arabidopsis thaliana	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	4e-12	73	Glycine max	Gma.11362.1.S1_at	AW395011	-	-	1e-4	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please select
0.05	1e-6	54	Hordeum vulgare	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.08	4e-3	44	Oryza sativa	Os07g0108900	AF058698.1	-	MADS15 protein	8e-16	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	9e-16	85	Populus trichocarpa	PtpAffx.16980.2.A1_a_at	CV271660	hypothetical protein	-	7e+0	At5g23260	TT16 (TRANSPARENT TESTA16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-5	50	Triticum aestivum	Ta.777.1.S1_at	AB007505.1	MADS box transcription factor	-	1e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.08	2e-5	50	Zea mays	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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