Gene omics information

Query gene ID	1621822_at
Gene name	hypothetical protein LOC100263358
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1621822_at	CF516639	hypothetical protein LOC100263358	-	6e-7	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	S.X.	H.G.	Please select
0.71	89.5	1615935_at	CA809247	hypothetical protein LOC100259118	-	2e-7	At1g76980	-	S.X.	H.G.	Please select
0.40	57.7	1609516_at	CB976436	similar to ribosomal protein L2	-	8e-9	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	S.X.	H.G.	Please select
0.29	37.7	1618746_at	CF516441	-	-	4e+0	At5g57760	unknown protein	S.X.	H.G.	Please select
0.29	37.7	1617225_at	BQ798495	hypothetical protein LOC100245147	-	3e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	S.X.	H.G.	Please select
0.12	12.1	1622320_at	CF514116	-	-	2e+1	At5g05113	unknown protein	S.X.	H.G.	Please select
0.10	10.3	1613759_s_at	CF517125	hypothetical protein LOC100259323	-	1e+0	At1g74870	protein binding / zinc ion binding	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	99.5	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.8	99.0	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.4	98.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.9	98.6	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.5	98.4	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.7	97.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.7	97.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-3	42	1617073_at	CF517100	hypothetical protein LOC100246896	-	3e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	C.G.	S.X.	Please select
0.03	2e-1	36	1621192_at	CF516648	hypothetical protein LOC100248705	-	4e+0	At2g27920	SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51)	C.G.	S.X.	Please select
0.02	2e-1	36	1617033_at	CF511776	hypothetical protein LOC100250388	-	9e-10	At1g28470	ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10)	C.G.	S.X.	Please select
0.02	2e-1	36	1607408_at	CF216013	-	-	2e-1	At1g10720	BSD domain-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	1621110_at	CF212872	hypothetical protein LOC100268077	-	1e-10	At3g24506	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	1620232_at	CD005509	-	-	1e+0	At5g67060	HEC1 (HECATE 1)	C.G.	S.X.	Please select
0.01	7e-1	34	1618772_at	CB980294	hypothetical protein LOC100267076	-	3e-10	At2g38410	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	1616445_at	CD716014	hypothetical protein LOC100262839	-	1e+0	At5g67060	HEC1 (HECATE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	1613427_at	CF415831	hypothetical LOC100249754	-	2e-2	At1g61170	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	6e-7	56	Arabidopsis thaliana	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	9e-81	301	Glycine max	Gma.8498.1.S1_at	AF329816.1	Cu/Zn-superoxide dismutase copper chaperone precursor	-	1e-14	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please select
0.02	7e-2	38	Hordeum vulgare	Contig22362_at	Contig22362	-	-	9e-2	At5g16110	unknown protein	C.G.	S.X.	Please select
0.10	2e-27	125	Oryza sativa	Os04g0573200	AK120348.1	-	Copper/Zinc superoxide dismutase family protein	4e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	8e-75	282	Populus trichocarpa	PtpAffx.2587.2.S1_at	CF233078	-	-	6e-20	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	6e-7	56	Triticum aestivum	Ta.22744.1.S1_at	CA719186	-	-	1e-1	At4g22550	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.22	2e-14	79	Zea mays	Zm.9144.1.A1_at	BM340758	copper chaperone for superoxide dismutase	-	3e-5	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage