CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621798_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 1621798_at CF203395.1 - - 1e-3 At5g65510 AIL7 (AINTEGUMENTA-like 7) S.X. H.G.
0.39 54.9 1611597_at CB918250 hypothetical protein LOC100252439 - 1e-1 At1g51650 ATP synthase epsilon chain, mitochondrial S.X. H.G.
0.36 50.7 1618057_at CF207962 hypothetical protein LOC100265221 - 4e+0 At5g49410 unknown protein S.X. H.G.
0.35 48.5 1619403_at CF211963 hypothetical protein LOC100263522 - 1e+0 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) S.X. H.G.
0.35 48.5 1612828_at BQ799707 hypothetical protein LOC100241128 - 3e-14 At3g60340 palmitoyl protein thioesterase family protein S.X. H.G.
0.34 46.8 1612930_at CB975986 hypothetical protein LOC100255839 - 6e-7 At4g25570 ACYB-2 S.X. H.G.
0.33 45.7 1612192_s_at CF518716 similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase - 8e-86 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) S.X. H.G.
0.32 43.1 1622610_at CF413855 hypothetical protein LOC100264665 - 5e-6 At5g15090 VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) S.X. H.G.
0.32 43.1 1617299_at CD801559 hypothetical protein LOC100249941 - 3e-31 At2g46225 ABIL1 (Abi-1-like 1) S.X. H.G.
0.32 43.1 1615704_at CB970180 hypothetical protein LOC100253600 - 9e-5 At3g22180 zinc finger (DHHC type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 97.7 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.7 96.2 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
3.7 96.2 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
3.0 94.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
2.9 93.8 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.8 93.4 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.7 93.0 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1618456_at CF207305 hypothetical protein LOC100254070 - 1e+0 At5g51190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 1e+0 32 1612335_at CF207303 hypothetical protein LOC100259681 - 4e-7 At3g60070 - C.G. S.X.
0.02 5e+0 30 1622860_at CA809326 hypothetical protein LOC100256973 - 1e-81 At2g28305 unknown protein C.G. S.X.
0.02 5e+0 30 1622278_at CD714872 - - 8e-2 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) C.G. S.X.
0.02 5e+0 30 1621290_at BM436914 - - 2e-2 At4g25990 CIL C.G. S.X.
0.02 5e+0 30 1617517_at CF606810 hypothetical protein LOC100265819 - 2e-2 At4g25990 CIL C.G. S.X.
0.02 5e+0 30 1616182_at CB978298 hypothetical protein LOC100242352 - 1e-16 At1g14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein C.G. S.X.
0.02 5e+0 30 1615714_at CF201075.1 - - 3e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) C.G. S.X.
0.02 5e+0 30 1614908_at CF413969 - - 4e-1 At2g33860 ETT (ETTIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 44 Arabidopsis thaliana At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB - - - C.G. S.X.
0.09 4e-4 46 Glycine max Gma.8249.1.S1_at BI674319 - - 3e-55 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.04 6e-1 34 Hordeum vulgare EBro08_SQ012_P04_at EBro08_SQ012_P04 - - 1e+1 At4g28190 ULT1 (ULTRAPETALA1) C.G. S.X.
0.03 2e+0 34 Oryza sativa Os12g0182100 9640.m00748 - - 3e-2 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.17 2e-12 73 Populus trichocarpa PtpAffx.209236.1.S1_x_at pmrna18264 AP2 domain-containing transcription factor - 2e-17 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.04 8e-2 38 Triticum aestivum TaAffx.58818.1.S1_at CA615111 - - 1e+0 At5g54531 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.8401.1.A1_a_at CF008000 hypothetical protein LOC100278973 - 8e-2 At3g07910 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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