Gene omics information

Query gene ID	1621762_at
Gene name	hypothetical protein LOC100242812
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	S.X.	H.G.	Please select
0.57	79.8	1611102_at	CF603491	hypothetical protein LOC100259129	-	4e-22	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	S.X.	H.G.	Please select
0.33	45.7	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.30	39.4	1618937_at	CB920899	hypothetical protein LOC100255532	-	2e-14	At4g29960	unknown protein	S.X.	H.G.	Please select
0.18	19.4	1609445_at	CF215229	hypothetical protein LOC100242218	-	6e-69	At4g29160	SNF7.1	S.X.	H.G.	Please select
0.13	13.3	1612896_at	BQ794992	hypothetical protein LOC100264259	-	1e+0	At5g42470	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-49	194	1608461_at	BQ797145	hypothetical protein LOC100264959	-	6e-64	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.03	3e-1	34	1621354_at	CD713565	-	-	3e-1	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	C.G.	S.X.	Please select
0.03	3e-1	34	1619932_at	CF205290.1	-	-	2e+0	At2g29460	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	C.G.	S.X.	Please select
0.03	3e-1	34	1617579_at	CD713565	hypothetical protein LOC100252810	-	3e-1	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	C.G.	S.X.	Please select
0.03	3e-1	34	1614136_at	CB347754	hypothetical protein LOC100246668	-	7e-55	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please select
0.03	3e-1	34	1610648_s_at	CB343030	hypothetical protein LOC100243726	-	4e+0	At3g58550	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1621822_at	CF516639	hypothetical protein LOC100263358	-	6e-7	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please select
0.03	1e+0	32	1615704_at	CB970180	hypothetical protein LOC100253600	-	9e-5	At3g22180	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1614176_at	CB004193	-	-	2e+0	At1g23280	MAK16 protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	6e-30	131	Arabidopsis thaliana	At3g55380	824704	UBC14 (ubiquitin-conjugating enzyme 14)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	8e-33	141	Glycine max	Gma.3757.1.S1_at	CD405183	-	-	6e-53	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.19	1e-10	65	Hordeum vulgare	Contig3462_at	Contig3462	-	-	5e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.20	1e-13	77	Oryza sativa	Os01g0839700	AK104148.1	-	Ubiquitin carrier protein	1e-39	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	4e-53	208	Populus trichocarpa	PtpAffx.18887.1.S1_at	CV260915	hypothetical protein	-	6e-31	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	1e-12	73	Triticum aestivum	Ta.26942.1.S1_at	CD491274	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please select
0.21	2e-12	71	Zea mays	Zm.16785.1.A1_at	AF032468.1	hypothetical protein LOC100272466	-	7e-37	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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