Gene omics information

Query gene ID	1621760_at
Gene name	hypothetical protein LOC100241392
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	88.3	1621760_at	BQ794397	hypothetical protein LOC100241392	-	1e-8	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	S.X.	H.G.	Please select
0.71	89.5	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.53	75.2	1622662_at	CF510959	hypothetical protein LOC100249169	-	1e-47	At5g23670	LCB2	S.X.	H.G.	Please select
0.47	67.7	1608047_at	CF405221	hypothetical protein LOC100267805	-	1e-5	At3g10260	reticulon family protein	S.X.	H.G.	Please select
0.46	66.5	1606431_at	BQ796467	hypothetical protein LOC100242612	-	6e-1	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	S.X.	H.G.	Please select
0.46	66.5	1614352_at	CD801544	hypothetical protein LOC100244495	-	2e-15	At5g42000	ORMDL family protein	S.X.	H.G.	Please select
0.45	64.6	1613063_at	CF415295	hypothetical protein LOC100257432	-	5e-31	At3g61113	-	S.X.	H.G.	Please select
0.44	64.1	1615601_at	BQ792209	hypothetical protein LOC100265898	-	5e-9	At4g02370	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1619908_at	CD798796	hypothetical protein LOC100265022	-	2e-5	At3g55640	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.33	45.7	1618794_at	CB976136	hypothetical protein LOC100240866	-	1e-13	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	99.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2	98.8	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2	98.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.8	97.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5	95.7	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	5e-8	57	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	C.G.	S.X.	Please select
0.04	3e-6	52	1622386_at	BQ794629	hypothetical protein LOC100264172	-	9e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.10	2e-4	46	1617671_s_at	AY395744.1	hypothetical protein LOC100248784	-	2e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.08	2e-4	46	1606975_at	CD799008	hypothetical protein LOC100248784	-	4e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.03	3e-3	42	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.02	3e-3	42	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.05	3e-3	42	1609683_at	CF604955	hypothetical protein LOC100249982	-	2e-11	At2g47520	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	4e-2	38	1616902_at	CB340126	-	-	6e-2	At3g16120	dynein light chain, putative	C.G.	S.X.	Please select
0.02	2e-1	36	1622162_at	CD718954	-	-	1e+0	At3g02390	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-8	61	Arabidopsis thaliana	At1g50640	841486	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-12	73	Glycine max	GmaAffx.92135.1.S1_s_at	CF807860	-	-	2e-2	At3g20310	ERF7 (ETHYLINE RESPONSE FACTOR 7)	C.G.	S.X.	Please select
0.11	3e-10	65	Hordeum vulgare	Contig6636_at	Contig6636	-	-	4e-11	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.12	2e-8	61	Oryza sativa	OsAffx.14373.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	8e-4	46	Populus trichocarpa	PtpAffx.205742.1.S1_at	pmrna11334	AP2/ERF domain-containing transcription factor	-	2e-2	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	3e-18	93	Triticum aestivum	TaAffx.107091.1.S1_at	CA706332	-	-	2e-2	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.12	4e-12	71	Zea mays	Zm.18520.1.A1_at	CF632042	-	-	8e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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