Gene omics information

Query gene ID	1621730_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1621730_at	CF511530	-	-	7e-19	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.20	22.4	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	S.X.	H.G.	Please select
0.10	10.3	1607773_at	CD719602	-	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	S.X.	H.G.	Please select
0.01	2.1	1620387_at	CD719602	hypothetical protein LOC100260954	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	S.X.	H.G.	Please select
0.01	2.1	1607928_at	CF201793.1	-	-	5e-3	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.01	2.1	1611160_at	CF415355	-	-	4e+0	At1g48330	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	99.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
6.4	98.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
3.4	95.5	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	854	1617972_at	CB976079	-	-	7e-19	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.10	2e-38	159	1620694_at	CF513121	hypothetical protein LOC100246616	-	3e-138	At4g16155	dihydrolipoyl dehydrogenase	C.G.	S.X.	Please select
0.02	4e-2	38	1621452_at	CF514057	-	-	1e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.01	2e-1	36	1617170_at	CF403242	hypothetical protein LOC100243828 /// hypothetical protein LOC100254631	-	7e-16	At3g07370	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)	C.G.	S.X.	Please select
0.02	7e-1	34	1615677_at	CA816761	-	-	4e+0	At4g21216	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1621828_at	CD798506	hypothetical protein LOC100266186	-	1e+0	At5g26667	PYR6	C.G.	S.X.	Please select
0.01	3e+0	32	1621567_at	BQ793310	hypothetical protein LOC100259466	-	1e-4	At2g37410	ATTIM17-2	C.G.	S.X.	Please select
0.02	3e+0	32	1619073_at	CF206347.1	-	-	6e-34	At5g04140	GLU1 (GLUTAMATE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	1618596_at	CF212341	hypothetical protein LOC100264337	-	2e-1	At1g27220	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	7e-19	95	Arabidopsis thaliana	At3g16950	820951	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-30	135	Glycine max	Gma.9091.1.S1_at	AI855973	-	-	3e-70	At4g16155	dihydrolipoyl dehydrogenase	C.G.	S.X.	Please select
0.16	1e-12	73	Hordeum vulgare	Contig5576_at	Contig5576	-	-	9e-60	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.11	1e-9	65	Oryza sativa	Os05g0156700	CB676901	-	Mercuric reductase family protein	4e-68	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-14	81	Populus trichocarpa	Ptp.421.1.A1_at	CK089043	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3	-	9e-64	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-13	77	Triticum aestivum	Ta.1358.1.S1_at	BT009421.1	-	-	1e-49	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.10	7e-5	48	Zea mays	Zm.3865.1.A1_at	CA403460	-	-	7e-70	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage