Gene omics information

Query gene ID	1621723_at
Gene name	hypothetical protein LOC100248744
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1621723_at	CA817798	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	S.X.	H.G.	Please select
0.83	94.6	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.57	79.8	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	S.X.	H.G.	Please select
0.50	72.7	1615925_at	BQ793198	hypothetical protein LOC100260124	-	3e-4	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	S.X.	H.G.	Please select
0.50	72.7	1610616_at	CB921212	hypothetical protein LOC100260773 /// hypothetical protein LOC100252365	-	5e-3	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	S.X.	H.G.	Please select
0.48	68.8	1619180_at	CB976469	hypothetical protein LOC100252897	-	2e-14	At1g17810	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.9	99.8	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
12.3	99.8	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.1	99.8	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.6	99.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.5	99.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.6	99.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.6	99.6	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.1	99.5	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.7	99.5	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-6	52	1609172_at	BQ792053	hypothetical protein LOC100243607	-	3e-12	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	C.G.	S.X.	Please select
0.04	6e-5	48	1609555_at	CD719835	hypothetical protein LOC100261123	-	2e-30	At5g08790	ATAF2	C.G.	S.X.	Please select
0.02	1e-2	40	1619915_at	CB979476	similar to protein kinase family protein	-	2e-5	At5g18610	protein kinase family protein	C.G.	S.X.	Please select
0.02	6e-2	38	1620507_at	CB979490	hypothetical protein LOC100242836	-	1e-19	At5g04410	NAC2	C.G.	S.X.	Please select
0.02	6e-2	38	1607902_at	CD718712	-	-	1e-19	At5g04410	NAC2	C.G.	S.X.	Please select
0.01	9e-1	34	1622076_at	CB348546	-	-	3e-1	At2g27180	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	1612563_s_at	CF202478.1	hypothetical protein LOC100242819	-	3e-3	At3g50550	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select
0.02	9e-1	34	1607750_at	CB347759	-	-	2e-5	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	6e-14	79	Arabidopsis thaliana	At1g61110	842404	anac025 (Arabidopsis NAC domain containing protein 25)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	9e-20	99	Glycine max	GmaAffx.84569.1.S1_at	BM092513	NAC domain protein	-	6e-17	At3g15510	ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)	C.G.	S.X.	Please select
0.07	4e-1	36	Hordeum vulgare	Contig6233_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	C.G.	S.X.	Please select
0.17	5e-19	97	Oryza sativa	Os07g0566500	AK063406.1	-	No apical meristem (NAM) protein domain containingprotein	1e-3	At3g15510	ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	2e-27	125	Populus trichocarpa	PtpAffx.137829.2.S1_at	CX655862	NAC domain protein, IPR003441 /// NAC domain protein, IPR003441	-	1e-17	At3g15510	ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e-2	40	Triticum aestivum	Ta.8928.1.S1_at	CA643290	-	-	3e-2	At1g01720	ATAF1	C.G.	S.X.	Please select
0.06	3e-1	36	Zea mays	Zm.5882.1.A1_at	AI637237	-	-	2e-1	At1g52880	NAM (NO APICAL MERISTEM)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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