Gene omics information

Query gene ID	1621718_at
Gene name	hypothetical protein LOC100244137
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1621718_at	BQ794503	hypothetical protein LOC100244137	-	5e-26	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	S.X.	H.G.	Please select
0.50	72.7	1617742_at	CA817105	hypothetical protein LOC100255734	-	4e-2	At5g39910	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	S.X.	H.G.	Please select
0.32	43.1	1610485_a_at	CF207352	hypothetical protein LOC100263653	-	1e+0	At4g02980	ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.25	30.5	1609472_at	CB349683	hypothetical protein LOC100261641	-	4e-8	At3g03790	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.13	13.3	1614181_at	CB340606	hypothetical protein LOC100263351	-	1e-1	At1g34320	unknown protein	S.X.	H.G.	Please select
0.11	11.3	1607940_at	BQ800262	hypothetical protein LOC100261463	-	6e-1	At1g69470	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	1614897_at	CD798695	hypothetical protein LOC100247155	-	2e-6	At1g22140	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1622821_at	CB003034	-	-	3e-1	At3g48970	copper-binding family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1621143_at	CA816025	hypothetical protein LOC100243239	-	7e-3	At5g22280	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1619002_at	CB003034	-	-	3e-1	At3g48970	copper-binding family protein	C.G.	S.X.	Please select
0.01	3e+0	32	1618004_s_at	CB339217	AlaT1	-	2e-110	At1g70580	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	3e+0	32	1606795_at	CB339217	AlaT1	-	2e-110	At1g70580	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	1e+1	30	1622499_at	CB340102	-	-	4e-1	At3g18518	RTFL20 (ROTUNDIFOLIA LIKE 20)	C.G.	S.X.	Please select
0.01	1e+1	30	1621614_at	CB837613	hypothetical LOC100249559	-	0	Atcg01000	-	C.G.	S.X.	Please select
0.01	1e+1	30	1621357_s_at	CF518673	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	5e-153	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	5e-26	119	Arabidopsis thaliana	At2g25940	817135	ALPHA-VPE (alpha-vacuolar processing enzyme)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	2e-66	254	Glycine max	Gma.5966.1.S1_at	CD418432	-	-	1e-45	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.12	9e-11	67	Hordeum vulgare	Contig2779_at	Contig2779	-	-	2e-6	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.10	9e-8	59	Oryza sativa	Os01g0559600	AB025310.1	-	Vacuolar processing enzyme, alpha-isozymeprecursor (EC 3.4.22.-) (Alpha-VPE)	3e-16	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.50	5e-169	595	Populus trichocarpa	Ptp.5984.1.S1_s_at	CV229997	hypothetical protein	-	2e-91	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	5e-20	99	Triticum aestivum	Ta.30798.2.S1_at	CK162752	-	-	5e-9	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.18	5e-15	81	Zea mays	Zm.308.1.S1_at	AF082347.1	C13 endopeptidase NP1 precursor	-	3e-16	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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