Gene omics information

Query gene ID	1621699_at
Gene name	hypothetical protein LOC100248753
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.3	1621699_at	CF212982	hypothetical protein LOC100248753	-	2e-35	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	S.X.	H.G.	Please select
0.63	84.3	1609816_at	CF514960	hypothetical protein LOC100264261	-	2e-6	At5g08560	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.61	83.2	1618198_at	CB007829	hypothetical protein LOC100242410	-	3e-1	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select
0.56	79.4	1609751_at	CA817020	hypothetical protein LOC100253636	-	5e-51	At5g18520	-	S.X.	H.G.	Please select
0.53	75.2	1616458_s_at	CF515510	hypothetical protein LOC100256310	-	1e-1	At3g43910	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1607134_at	BQ794051	hypothetical protein LOC100243531	-	2e+0	At3g51100	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1611513_s_at	CF414212	hypothetical protein LOC100262157	-	2e-1	At3g49950	scarecrow transcription factor family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-20	99	1613931_at	CA814685	hypothetical protein LOC100257117	-	7e-5	At2g46540	unknown protein	C.G.	S.X.	Please select
0.03	6e-8	57	1615317_at	CA809272	hypothetical protein LOC100266100	-	2e-9	At3g51510	unknown protein	C.G.	S.X.	Please select
0.02	3e-6	52	1620452_at	CF516600	similar to 50S ribosomal protein-related	-	2e-7	At3g45020	50S ribosomal protein-related	C.G.	S.X.	Please select
0.03	6e-5	48	1611806_at	BQ800556	hypothetical protein LOC100250197	-	2e+0	At2g27030	CAM5 (CALMODULIN 5)	C.G.	S.X.	Please select
0.02	2e-4	46	1618248_at	CF514874	hypothetical protein LOC100250810	-	1e-19	At5g20180	ribosomal protein L36 family protein	C.G.	S.X.	Please select
0.03	9e-4	44	1621462_at	CA817683	hypothetical protein LOC100259318	-	5e-38	At3g22320	NRPB5	C.G.	S.X.	Please select
0.02	5e-2	38	1621447_s_at	CF404909	hypothetical protein LOC100261458	-	1e-85	At3g26340	20S proteasome beta subunit E, putative	C.G.	S.X.	Please select
0.02	5e-2	38	1606673_at	CB005473	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	C.G.	S.X.	Please select
0.02	2e-1	36	1621379_at	CF214294	hypothetical protein LOC100267719	-	2e-4	At1g26750	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-35	151	Arabidopsis thaliana	At5g09260	830785	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	F:unknown;P:vesicle-mediated transport, N-terminal protein myristoylation;C:ESCRT III complex, plasma membrane;MOFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	9e-29	129	Glycine max	GmaAffx.665.3.S1_at	BE440512	-	-	2e-11	At5g63880	VPS20.1	C.G.	S.X.	Please select
0.03	2e-5	50	Hordeum vulgare	Contig7957_at	Contig7957	-	-	1e-8	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	C.G.	S.X.	Please select
0.04	2e-5	52	Oryza sativa	Os02g0596500	AK072562.1	-	Snf7 family protein	1e-7	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	2e-88	327	Populus trichocarpa	Ptp.5388.1.S1_at	BU834456	hypothetical protein	-	5e-74	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e-1	36	Triticum aestivum	Ta.15633.1.S1_at	CA485923	-	-	6e-1	At3g03100	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please select
0.10	8e-5	48	Zea mays	Zm.5490.1.S1_at	AY108961.1	hypothetical protein LOC100216677	-	1e-5	At5g63880	VPS20.1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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