CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621698_at

Gene name similar to bHLH transcription factor Upa20

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621698_at BQ796130 similar to bHLH transcription factor Upa20 - 8e-2 At3g20510 unknown protein S.X. H.G.
0.91 98.8 1619493_at CB976133 hypothetical protein LOC100251016 - 2e-30 At4g19120 ERD3 (early-responsive to dehydration 3) S.X. H.G.
0.67 87.9 1611979_at CB979128 hypothetical protein LOC100251016 - 1e-31 At4g19120 ERD3 (early-responsive to dehydration 3) S.X. H.G.
0.63 84.3 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) S.X. H.G.
0.56 79.4 1615212_at CF406027 ripening-related protein-like - 8e+0 At5g64040 PSAN S.X. H.G.
0.50 72.7 1611561_a_at CD800254 hypothetical protein LOC100240998 - 2e-2 At4g36850 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 99.6 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
9.3 99.6 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
9.2 99.5 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
9.1 99.5 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
9.0 99.5 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
9.0 99.5 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
8.9 99.5 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
8.8 99.5 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
8.8 99.5 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
8.8 99.5 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 1614858_at CD801986 hypothetical protein LOC100258231 - 1e-6 At5g04430 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) C.G. S.X.
0.02 1e-1 36 1608047_at CF405221 hypothetical protein LOC100267805 - 1e-5 At3g10260 reticulon family protein C.G. S.X.
0.03 4e-1 34 1620758_at CF516627 - - 8e-2 At3g17261 unknown protein C.G. S.X.
0.02 4e-1 34 1619488_at CB340787 - - 6e-1 At5g49015 Expressed protein C.G. S.X.
0.03 4e-1 34 1606710_s_at CF516627 - - 8e-2 At3g17261 unknown protein C.G. S.X.
0.02 2e+0 32 1622490_at CF208094 hypothetical protein LOC100262793 - 6e-1 At1g68490 unknown protein C.G. S.X.
0.02 2e+0 32 1622068_at CA816776 hypothetical protein LOC100252985 - 7e-3 At3g50780 - C.G. S.X.
0.03 2e+0 32 1620153_at BQ797385 - - 7e-2 At4g22513 - C.G. S.X.
0.02 2e+0 32 1618651_at CB005890 hypothetical protein LOC100241531 - 5e-13 At5g52960 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Arabidopsis thaliana At3g20510 821597 unknown protein F:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFO - - - C.G. S.X.
0.06 2e-3 44 Glycine max GmaAffx.34007.1.A1_at CD401341 - - 1e+0 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.04 4e-2 38 Hordeum vulgare S0000200069C03F1_at S0000200069C03F1 - - 7e-1 At2g27770 unknown protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os03g0417300 9631.m02969 - - 4e+0 At5g50070 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.06 1e-10 67 Populus trichocarpa PtpAffx.159337.1.A1_at CV277146 hypothetical protein - 4e-1 At1g20990 DC1 domain-containing protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.10942.1.A1_at BQ166865 - - 2e+0 At1g79050 DNA repair protein recA C.G. S.X.
0.03 9e+0 30 Zea mays Zm.7657.1.A1_at BM338496 hypothetical protein LOC100278001 - 1e+0 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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