Gene omics information

Query gene ID	1621693_at
Gene name	hypothetical protein LOC100248963
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1621693_at	BQ792185	hypothetical protein LOC100248963	-	5e-73	At1g75380	wound-responsive protein-related	S.X.	H.G.	Please select
0.83	94.6	1614496_at	CD797586	hypothetical protein LOC100259281	-	9e-8	At1g80570	F-box family protein (FBL14)	S.X.	H.G.	Please select
0.80	93.6	1616671_at	CF373738	hypothetical protein LOC100250156	-	2e-20	At3g32930	unknown protein	S.X.	H.G.	Please select
0.71	89.5	1607583_at	CA810758	hypothetical protein LOC100264001	-	6e-2	At5g49700	DNA-binding protein-related	S.X.	H.G.	Please select
0.67	87.9	1621329_at	CF607644	-	-	1e+0	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	S.X.	H.G.	Please select
0.31	41.3	1613168_at	CB971028	hypothetical protein LOC100257704	-	4e-42	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.7	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.8	99.6	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
7.8	99.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8	99.3	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
6.3	98.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.1	98.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
5.5	98.4	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-130	464	1619094_at	CF405729	-	-	3e+0	At2g21900	WRKY59	C.G.	S.X.	Please select
0.17	4e-80	297	1611139_at	CB977334	-	-	1e+0	At2g24840	AGL61 (AGAMOUS-LIKE 61)	C.G.	S.X.	Please select
0.02	2e-1	36	1620999_at	CF211833	hypothetical protein LOC100249023	-	1e+0	At3g05800	transcription factor	C.G.	S.X.	Please select
0.01	2e-1	36	1620544_at	CB001525	-	-	2e+0	At2g42130	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	1613195_at	CD005899	-	-	1e+0	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select
0.02	2e-1	36	1612837_at	CA809572	hypothetical protein LOC100244093	-	3e-14	At5g57860	ubiquitin family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1609400_at	CD005899	-	-	1e+0	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select
0.01	2e-1	36	1607935_at	CB001525	-	-	2e+0	At2g42130	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	1619649_at	BQ793844	hypothetical protein LOC100259453	-	1e+0	At2g34860	EDA3 (embryo sac development arrest 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	5e-73	276	Arabidopsis thaliana	At1g75380	843874	wound-responsive protein-related	F:unknown;P:unknown;C:unknown;BOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	5e-83	309	Glycine max	GmaAffx.3619.1.S1_at	BQ785103	-	-	5e-76	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please select
0.09	2e-6	54	Hordeum vulgare	Contig4701_at	Contig4701	-	-	2e-1	At1g19660	wound-responsive family protein	C.G.	S.X.	Please select
0.11	7e-9	63	Oryza sativa	Os08g0357000	BQ905925	-	Conserved hypothetical protein	3e+1	At4g01340	CHP-rich zinc finger protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-74	282	Populus trichocarpa	PtpAffx.10771.1.S1_a_at	CV283492	hypothetical protein	-	9e-50	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	3e-3	44	Triticum aestivum	Ta.641.1.S1_at	BG906659	-	-	7e-4	At1g19660	wound-responsive family protein	C.G.	S.X.	Please select
0.09	3e-7	56	Zea mays	Zm.3656.1.A1_at	AY106382.1	Wound responsive protein-like	-	2e-1	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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