CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621655_at

Gene name hypothetical protein LOC100243738

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 75.2 1621655_at CA817336 hypothetical protein LOC100243738 - 3e-2 At5g51670 unknown protein S.X. H.G.
0.55 77.3 1621772_at CD005226 hypothetical protein LOC100253693 - 7e-20 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
0.36 50.7 1615113_at CF213771 hypothetical protein LOC100264151 - 8e-3 At3g10190 calmodulin, putative S.X. H.G.
0.35 48.5 1614205_at CF404132 hypothetical protein LOC100256824 - 7e-9 At2g02960 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.17 18.2 1617467_at BQ793846 hypothetical protein LOC100265852 - 6e-22 At5g28830 calcium-binding EF hand family protein S.X. H.G.
0.15 15.6 1607044_at BM437855 hypothetical protein LOC100246065 - 1e-35 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 97.6 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.6 97.6 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
4.0 96.7 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM147732 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 61
3.1 94.6 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.5 91.9 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 48 1620996_at CB342683 hypothetical protein LOC100244314 - 4e-1 At1g23040 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 5e-1 34 1613750_at CF510958 hypothetical protein LOC100257580 - 1e+0 At4g20470 unknown protein C.G. S.X.
0.01 5e-1 34 1611047_at BQ798821 DnaJ protein-like - 1e-27 At3g44110 ATJ3 C.G. S.X.
0.03 5e-1 34 1609766_at CF214737 hypothetical protein LOC100255070 - 4e+0 At5g22850 aspartyl protease family protein C.G. S.X.
0.02 5e-1 34 1606658_at CB981496 hypothetical protein LOC100242421 /// hypothetical protein LOC100249803 - 5e-26 At2g22870 EMB2001 (embryo defective 2001) C.G. S.X.
0.02 2e+0 32 1621351_s_at CB340283 hypothetical protein LOC100250504 - 1e-39 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.02 2e+0 32 1616679_at BQ800439 hypothetical protein LOC100251686 - 1e-35 At2g38700 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) C.G. S.X.
0.02 2e+0 32 1615586_s_at CF207487 hypothetical protein LOC100260303 - 1e-32 At3g55830 EPC1 (ECTOPICALLY PARTING CELLS) C.G. S.X.
0.01 2e+0 32 1614110_s_at CD801616 cullin 1 - 2e-19 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At5g51670 835241 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;POB - - - C.G. S.X.
0.12 3e-9 63 Glycine max GmaAffx.83335.1.S1_at BG509014 - - 4e-4 At5g04550 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare HS07C07u_at HS07C07u - - 4e+0 At5g25570 unknown protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os03g0439800 D15919 - Conserved hypothetical protein 3e+0 At2g03955 - C.G. S.X.
0.14 2e-13 77 Populus trichocarpa PtpAffx.1197.1.S1_a_at CV240851 hypothetical protein - 2e-9 At5g04550 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.18758.1.S1_at CA641756 - - 3e+0 At4g21850 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.8770.1.A1_at BM075563 - - 5e+0 At5g60680 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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