Gene omics information

Query gene ID	1621623_at
Gene name	hypothetical protein LOC100253665
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	84.7	1621623_at	CF208039	hypothetical protein LOC100253665	-	2e-2	At3g25011	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1616170_at	BQ797746	hypothetical protein LOC100242801	-	1e-84	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.24	28.7	1607551_at	CF214610	hypothetical protein LOC100255512	-	1e+0	At1g45243	DC1 domain-containing protein	S.X.	H.G.	Please select
0.24	28.7	1613665_at	CB973784	hypothetical protein LOC100265526	-	6e-2	At5g26790	unknown protein	S.X.	H.G.	Please select
0.18	19.4	1612370_at	CB974818	hypothetical protein LOC100252199	-	1e-46	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please select
0.17	18.2	1620597_at	CF209339	hypothetical protein LOC100257336	-	5e+0	At4g39810	exonuclease/ nucleic acid binding	S.X.	H.G.	Please select
0.16	16.7	1610822_at	BQ794756	hypothetical protein LOC100251604	-	1e-3	At4g17720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.15	15.6	1616267_at	BQ795016	-	-	1e-118	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.7	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-2	36	1616161_at	CB982478	-	-	4e+0	At5g15840	CO (CONSTANS)	C.G.	S.X.	Please select
0.03	7e-2	36	1611645_at	CB349661	hypothetical protein LOC100252175	-	4e-1	At1g11360	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	3e-1	34	1620176_at	CF209156	hypothetical protein LOC100264829	-	2e-3	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e-1	34	1616068_at	CF403455	-	-	5e-7	At1g78060	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.03	3e-1	34	1613230_at	CB343417	hypothetical protein LOC100250421	-	1e+0	At1g47820	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1612239_at	CF610039	hypothetical protein LOC100262668	-	5e-7	At1g78060	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.02	1e+0	32	1619940_at	CF518701	hypothetical protein LOC100241361 /// hypothetical protein LOC100261422	-	3e-2	At2g32980	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1619416_at	CB348568	hypothetical protein LOC100267189	-	9e-18	At5g39850	40S ribosomal protein S9 (RPS9C)	C.G.	S.X.	Please select
0.03	1e+0	32	1618168_s_at	CA809565	hypothetical protein LOC100266379	-	4e-7	At2g18020	EMB2296 (embryo defective 2296)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-2	40	Arabidopsis thaliana	At3g25011	6240848	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	6e-3	42	Glycine max	Gma.11079.1.A1_at	CD390541	-	-	3e+0	At5g60510	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	C.G.	S.X.	Please select
0.04	8e-3	40	Hordeum vulgare	Contig12125_at	Contig12125	-	-	6e+0	At3g07522	unknown protein	C.G.	S.X.	Please select
Os02g0603500	0	Os10g0382000	Oryza sativa	Os02g0297100	9630.m01857	-	-	3e-2	At2g28160	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	C.G.	S.X.	Please select
0.05	1e+0	34	Populus trichocarpa	PtpAffx.209772.1.S1_at	pmrna19277	hypothetical protein	-	4e-1	At4g19100	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.78881.1.S1_at	CA725309	-	-	2e-1	At4g00270	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.17905.1.A1_at	AY104787.1	-	-	2e-6	At1g12160	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage