Gene omics information

Query gene ID	1621593_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1621593_s_at	AF347624.1	-	-	2e+0	At2g31083	CLE5 (CLAVATA3/ESR-RELATED 5)	S.X.	H.G.	Please select
0.73	90.8	1612357_s_at	CF203581.1	-	-	4e+0	At5g66240	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	87.9	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.60	81.9	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	S.X.	H.G.	Please select
0.55	77.3	1617605_at	CF513977	-	-	0	Atcg00680	-	S.X.	H.G.	Please select
0.36	50.7	1618379_s_at	CB343512	-	-	1e+0	At3g49115	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	99.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
7.4	99.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
7.1	99.1	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
6.4	98.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
6.2	98.8	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
6.2	98.8	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
6.1	98.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.9	98.6	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
5.9	98.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
5.8	98.6	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-127	452	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.10	2e-127	452	1614503_at	CB972598	-	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.39	1e-38	157	1617905_at	CB343723	-	-	1e-12	Atcg00760	-	C.G.	S.X.	Please select
0.04	1e-1	34	1619599_at	BQ794450	hypothetical protein LOC100243558	-	4e+0	At5g01610	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	32	1618038_at	CA818781	enhanced disease susceptibility 1	-	1e-10	At3g48090	EDS1 (enhanced disease susceptibility 1)	C.G.	S.X.	Please select
0.03	2e+0	30	1622705_at	CB972683	hypothetical protein LOC100250961	-	2e+0	At3g16180	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select
0.04	2e+0	30	1617622_at	CB975038	hypothetical protein LOC100254784	-	6e-5	At5g03330	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.03	2e+0	30	1617617_at	CF514902	-	-	6e-19	At4g35860	ATGB2 (GTP-BINDING 2)	C.G.	S.X.	Please select
0.04	2e+0	30	1614997_at	CF373599	-	-	4e+0	At5g57000	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e+0	32	Arabidopsis thaliana	At2g31083	817663	CLE5 (CLAVATA3/ESR-RELATED 5)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-1	34	Glycine max	GmaAffx.54716.1.S1_s_at	BI699590	-	-	1e-5	At4g26660	-	C.G.	S.X.	Please select
0.03	3e+0	30	Hordeum vulgare	Contig24102_at	Contig24102	-	-	3e-2	At1g72080	unknown protein	C.G.	S.X.	Please select
0.20	3e-19	95	Oryza sativa	OsAffx.32334.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-10	65	Populus trichocarpa	PtpAffx.214145.1.S1_at	pmrna27522	hypothetical protein	-	1e-1	At4g11175	translation initiation factor IF-1, chloroplast, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-6	50	Triticum aestivum	TaAffx.129824.2.S1_at	CA623002	-	-	5e-16	Atcg00760	-	C.G.	S.X.	Please select
0.53	6e-17	85	Zea mays	ZmAffx.1517.1.S1_at	11990232-55	-	-	2e+0	At4g11175	translation initiation factor IF-1, chloroplast, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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