Gene omics information

Query gene ID	1621574_at
Gene name	hypothetical protein LOC100241803
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1621574_at	CF511059	hypothetical protein LOC100241803	-	3e-2	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	S.X.	H.G.	Please select
0.63	84.3	1619847_at	CF514271	hypothetical protein LOC100261336	-	1e+0	At3g22780	TSO1 (CHINESE FOR 'UGLY')	S.X.	H.G.	Please select
0.60	81.9	1608574_at	CF414345	hypothetical protein LOC100249220	-	6e-2	At3g63095	-	S.X.	H.G.	Please select
0.53	75.2	1620600_at	CF373014	hypothetical protein LOC100258054	-	4e+0	At3g26800	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1618801_at	CF208981	-	-	8e-3	At5g48500	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1611168_at	CF208285	hypothetical protein LOC100247366	-	2e-139	At1g50010	TUA2	S.X.	H.G.	Please select
0.42	60.1	1616611_at	CF404283	-	-	2e-1	At2g33220	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.4	98.3	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1617823_at	CB003660	hypothetical protein LOC100254113	-	1e+0	At5g64020	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1617403_at	CF208495	-	-	8e+0	At5g60810	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	1617207_at	CA814716	-	-	1e+1	At5g51100	FSD2 (FE SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.01	5e-1	34	1616860_at	BQ792203	hypothetical protein LOC100261021	-	4e-83	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.02	5e-1	34	1607017_at	CA816965	-	-	8e-2	At3g53470	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	C.G.	S.X.	Please select
0.02	2e+0	32	1618863_at	CF208339	hypothetical protein LOC100254505	-	3e-9	At3g23640	HGL1 (heteroglycan glucosidase 1)	C.G.	S.X.	Please select
0.01	2e+0	32	1615399_at	CB008078	hypothetical protein LOC100261334	-	1e-23	At3g10050	OMR1 (L-O-METHYLTHREONINE RESISTANT 1)	C.G.	S.X.	Please select
0.04	2e+0	32	1614883_at	CF210100	-	-	3e-1	At1g30070	SGS domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-2	40	Arabidopsis thaliana	At5g28290	832912	ATNEK3 (NIMA-RELATED KINASE3)	Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	8e-31	135	Glycine max	Gma.12137.1.S1_at	CD391200	-	-	1e-1	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEc0012C08r2_at	HVSMEc0012C08r2	-	-	8e-1	At1g57540	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	36	Oryza sativa	Os05g0306400	9633.m02144	-	-	3e+0	At2g20616	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	1e-26	121	Populus trichocarpa	PtpAffx.41165.2.S1_a_at	CV270769	hypothetical protein	-	1e-7	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	TaAffx.28408.1.S1_at	CA660552	-	-	7e-1	At2g35290	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Zea mays	Zm.4277.1.S1_at	AI834021	-	-	2e-18	At3g63280	ATNEK4 (NIMA-RELATED KINASE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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