CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621569_at

Gene name hypothetical protein LOC100257626

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1621569_at CD801894 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) S.X. H.G.
0.91 98.8 1616390_at CF211469 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative S.X. H.G.
0.80 93.6 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.77 92.3 1614138_at CA815957 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
0.67 87.9 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein S.X. H.G.
0.50 72.7 1622193_at CF208331 hypothetical protein LOC100265325 - 2e-35 At5g30510 RPS1 (RIBOSOMAL PROTEIN S1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.8 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.7 97.7 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
4.5 97.5 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
4.4 97.3 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
4.4 97.3 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
4.4 97.3 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
4.2 97.1 GSM147706 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 35
4.0 96.7 GSM147696 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 25
4.0 96.7 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
4.0 96.7 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 1611549_at CA817419 hypothetical protein LOC100243262 - 6e-99 At1g09770 ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) C.G. S.X.
0.03 5e-1 34 1609183_at CF405348 - - 2e-1 At1g32880 importin alpha-1 subunit, putative C.G. S.X.
0.02 2e+0 32 1621999_at CB007829 - - 3e-1 At1g51200 zinc finger (AN1-like) family protein C.G. S.X.
0.02 2e+0 32 1620756_at CD003945 similar to ATNMNAT (A. THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE); nicotinamide-nucleotide adenylyltransferase/ nicotinate-nucleotide adenylyltransferase - 3e-21 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) C.G. S.X.
0.02 2e+0 32 1618381_at CF415255 hypothetical protein LOC100265039 - 1e+0 At3g17730 anac057 (Arabidopsis NAC domain containing protein 57) C.G. S.X.
0.02 2e+0 32 1618198_at CB007829 hypothetical protein LOC100242410 - 3e-1 At1g51200 zinc finger (AN1-like) family protein C.G. S.X.
0.03 2e+0 32 1617254_at CD800040 hypothetical protein LOC100256653 - 5e-3 At5g39610 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) C.G. S.X.
0.02 2e+0 32 1616982_at CD003945 - - 3e-21 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) C.G. S.X.
0.03 8e+0 30 1622713_at CF404968 - - 3e+0 At4g10250 ATHSP22.0 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 4e-7 56 Arabidopsis thaliana At3g27850 822405 RPL12-C (ribosomal protein l12-c) 50S ribosomal protein L12-C - - - C.G. S.X.
0.24 2e-31 137 Glycine max Gma.2042.1.S1_at CD408331 - - 3e-5 At3g27850 RPL12-C (ribosomal protein l12-c) C.G. S.X.
0.05 8e-1 34 Hordeum vulgare Contig12977_at Contig12977 - - 5e+0 At4g16750 DRE-binding transcription factor, putative C.G. S.X.
0.11 8e-1 36 Oryza sativa OsAffx.4662.1.A1_at - - - 0 C.G. S.X.
0.11 2e-22 107 Populus trichocarpa PtpAffx.5813.1.S1_at CN524494 hypothetical protein - 8e-21 At3g27850 RPL12-C (ribosomal protein l12-c) C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.77891.1.S1_at CA741204 - - 3e-4 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.03 2e-1 36 Zea mays Zm.9038.1.S1_at BM331839 - - 1e+0 At2g44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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