CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621559_at

Gene name hypothetical protein LOC100262734

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621559_at CF415172 hypothetical protein LOC100262734 - 3e-51 At3g28860 ABCB19 S.X. H.G.
0.83 94.6 1614094_at CK138223.1 hypothetical protein LOC100255834 - 6e-43 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) S.X. H.G.
0.83 94.6 1614876_at CF213268 hypothetical protein LOC100244642 - 1e+0 At1g73510 unknown protein S.X. H.G.
0.67 87.9 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) S.X. H.G.
0.67 87.9 1609418_s_at CF568955 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein S.X. H.G.
0.57 79.8 1607851_at CF415102 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.4 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436404 V. riparia (VR, PI588259) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-3 40 1613372_at CF514636 similar to P-glycoprotein - 2e-5 At1g06070 bZIP transcription factor, putative (bZIP69) C.G. S.X.
0.02 1e-1 36 1621150_at CF516004 hypothetical protein LOC100248338 - 1e-8 At5g39040 ATTAP2 C.G. S.X.
0.04 1e-1 36 1612049_at CD007708 - - 2e-21 At1g70610 ATTAP1 C.G. S.X.
0.04 1e-1 36 1608273_at CD007708 hypothetical protein LOC100249410 - 2e-21 At1g70610 ATTAP1 C.G. S.X.
0.02 5e-1 34 1620728_at CA818747 hypothetical protein LOC100245878 - 2e+0 At4g14104 unknown protein C.G. S.X.
0.03 5e-1 34 1617097_at BQ797969 hypothetical protein LOC100253302 - 4e+0 At2g30810 gibberellin-regulated family protein C.G. S.X.
0.02 5e-1 34 1607932_at CF204349.1 hypothetical protein LOC100250334 - 4e-13 At1g75560 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 2e+0 32 1612517_at CB837330 - - 6e+0 At5g42053 unknown protein C.G. S.X.
0.02 2e+0 32 1609665_a_at CB005515 hypothetical protein LOC100251160 - 1e-10 At5g27930 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-51 202 Arabidopsis thaliana At3g28860 822519 ABCB19 Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. - - - C.G. S.X.
0.49 4e-82 305 Glycine max GmaAffx.8382.1.S1_at BF067368 - - 1e-19 At3g28860 ABCB19 C.G. S.X.
0.07 5e-2 38 Hordeum vulgare Contig16427_at Contig16427 - - 9e-2 At5g10120 ethylene insensitive 3 family protein C.G. S.X.
0.09 8e-4 46 Oryza sativa Os04g0642000 AK069342.1 - ABC transporter-like protein 3e-29 At3g28860 ABCB19 C.G. S.X.
0.24 2e-121 436 Populus trichocarpa PtpAffx.213926.1.S1_at pmrna27149 multidrug/pheromone exporter, MDR family, ABC transporter family - 3e-110 At3g28860 ABCB19 C.G. S.X.
0.11 1e-1 38 Triticum aestivum Ta.18606.1.S1_at CD452419 - - 2e-2 At2g36910 ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) C.G. S.X.
0.15 1e-2 40 Zea mays Zm.14944.1.A1_at CB334702 - - 1e+0 At5g27020 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage