CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621533_at

Gene name hypothetical protein LOC100248579

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 84.3 1621533_at CF514195 hypothetical protein LOC100248579 - 5e-45 At4g01810 protein transport protein-related S.X. H.G.
0.67 87.9 1611784_at CB971421 hypothetical protein LOC100256712 - 2e-37 At3g07300 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein S.X. H.G.
0.55 77.3 1611994_a_at CF214487 hypothetical protein LOC100260925 - 7e-8 At1g32230 RCD1 (RADICAL-INDUCED CELL DEATH1) S.X. H.G.
0.36 50.7 1606508_at CF405097 hypothetical protein LOC100241508 - 5e-7 At1g23900 GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) S.X. H.G.
0.35 48.5 1611182_at CF512709 hypothetical protein LOC100267624 - 2e-20 At3g03930 protein kinase-related S.X. H.G.
0.20 22.4 1613683_at CB976586 hypothetical protein LOC100255739 - 7e-15 At1g47560 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 96.0 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 36 1612502_at BQ799624 hypothetical protein LOC100252080 - 4e-17 At3g19390 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.02 2e-1 36 1610028_at CB971485 hypothetical protein LOC100265404 - 4e-5 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) C.G. S.X.
0.01 9e-1 34 1615617_at CF603834 hypothetical protein LOC100249849 - 2e+0 At2g05370 - C.G. S.X.
0.01 9e-1 34 1614599_at CF513204 hypothetical protein LOC100248579 - 1e-25 At4g01810 protein transport protein-related C.G. S.X.
0.01 9e-1 34 1614381_at CD713830 - - 9e+0 At5g54930 AT hook motif-containing protein C.G. S.X.
0.01 4e+0 32 1620212_at BQ796545 hypothetical protein LOC100254595 - 7e-1 At3g63120 CYCP1 C.G. S.X.
0.02 4e+0 32 1619933_s_at CB974435 - - 2e+0 At2g18969 - C.G. S.X.
0.01 4e+0 32 1619456_at CF404419 hypothetical protein LOC100251413 - 8e-12 At3g14310 ATPME3 C.G. S.X.
0.02 4e+0 32 1618820_x_at CF204114.1 - - 9e-2 At1g34350 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 5e-45 182 Arabidopsis thaliana At4g01810 828105 protein transport protein-related F:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;PMOFBVA - - - C.G. S.X.
0.35 2e-33 145 Glycine max GmaAffx.86461.1.S1_at BQ610189 - - 2e-29 At4g01810 protein transport protein-related C.G. S.X.
0.17 2e-15 83 Hordeum vulgare Contig16659_at Contig16659 - - 1e-6 At4g01810 protein transport protein-related C.G. S.X.
0.25 2e-18 95 Oryza sativa Os01g0321700 AK070488.1 - Sec23/Sec24 zinc finger domain containing protein 2e-3 At4g01810 protein transport protein-related C.G. S.X.
0.59 0 848 Populus trichocarpa PtpAffx.224256.1.S1_s_at pmrna42648 hypothetical protein - 4e-53 At4g01810 protein transport protein-related C.G. S.X.
0.17 4e-12 73 Triticum aestivum Ta.9562.2.S1_a_at CA639390 - - 7e-2 At4g01810 protein transport protein-related C.G. S.X.
0.19 6e-12 71 Zea mays Zm.13665.1.S1_at AY107083.1 - - 8e-4 At4g01810 protein transport protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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