Gene omics information

Query gene ID	1621469_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1621469_at	AY427115.1	-	-	3e-2	At3g50950	disease resistance protein (CC-NBS-LRR class), putative	S.X.	H.G.	Please select
0.60	81.9	1615410_at	CF405475	-	-	2e+0	At5g18760	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.46	66.5	1621537_at	CF413878	-	-	3e-1	At3g58840	-	S.X.	H.G.	Please select
0.36	50.7	1616215_at	CF206109.1	-	-	2e-11	At1g80120	unknown protein	S.X.	H.G.	Please select
0.30	39.4	1616288_at	CF605545	-	-	4e+0	At2g39920	acid phosphatase class B family protein	S.X.	H.G.	Please select
0.11	11.3	1620186_at	CF511359	-	-	7e-1	At5g65390	AGP7	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	99.4	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
8.2	99.4	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.9	99.3	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.9	99.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.3	99.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.8	99.0	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.6	98.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.6	98.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.5	98.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.5	98.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	6e-124	440	1617700_at	AY427115.1	hypothetical protein LOC100245534	-	3e-2	At3g50950	disease resistance protein (CC-NBS-LRR class), putative	C.G.	S.X.	Please select
0.07	2e-3	40	1621797_at	AY427169.1	-	-	2e-2	At1g36320	unknown protein	C.G.	S.X.	Please select
0.16	2e-3	40	1619191_at	AY427132.1	hypothetical protein LOC100260309	-	2e+0	At2g46480	GAUT2	C.G.	S.X.	Please select
0.07	2e-3	40	1618034_at	AY427169.1	hypothetical protein LOC100260835	-	2e-2	At1g36320	unknown protein	C.G.	S.X.	Please select
0.05	2e-3	40	1612362_at	CF372908	hypothetical protein LOC100243667	-	4e-31	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select
0.16	2e-3	40	1606538_at	AY427132.1	-	-	2e+0	At2g46480	GAUT2	C.G.	S.X.	Please select
0.14	3e-2	36	1619790_s_at	AY427188.1	-	-	5e-1	At3g53550	-	C.G.	S.X.	Please select
0.13	3e-2	36	1616499_at	AY427126.1	-	-	5e-1	At3g07760	-	C.G.	S.X.	Please select
0.14	3e-2	36	1616138_at	AY427188.1	-	-	5e-1	At3g53550	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	Arabidopsis thaliana	At3g50950	824259	disease resistance protein (CC-NBS-LRR class), putative	F:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBFOVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	GmaAffx.60481.1.S1_at	BE210582	-	-	2e-1	At5g56980	unknown protein	C.G.	S.X.	Please select
0.07	6e-2	36	Hordeum vulgare	AF032681_at	AF032681	-	-	6e-1	At1g75717	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	32	Oryza sativa	Os07g0608600	9635.m04180	-	-	3e+0	At2g16005	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-2	40	Populus trichocarpa	PtpAffx.218985.1.S1_x_at	pmrna34759	hypothetical protein	-	5e-1	At2g41997	LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e+0	30	Triticum aestivum	TaAffx.80736.1.S1_at	CA693340	-	-	5e-1	At1g12244	DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase	C.G.	S.X.	Please select
0.04	1e+1	28	Zea mays	ZmAffx.516.1.A1_at	AI692117	-	-	8e-1	At5g25630	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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