Gene omics information

Query gene ID	1621435_s_at
Gene name	hypothetical protein LOC100253802
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	88.3	1621435_s_at	CF515294	hypothetical protein LOC100253802	-	2e+0	At2g18040	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	S.X.	H.G.	Please select
0.85	94.9	1609190_at	BQ798327	hypothetical protein LOC100253381	-	6e+0	At3g23180	-	S.X.	H.G.	Please select
0.76	91.5	1612490_at	CB035871	-	-	4e+0	At2g39920	acid phosphatase class B family protein	S.X.	H.G.	Please select
0.76	91.5	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.73	90.8	1606679_at	CB036068	hypothetical protein LOC100246740	-	1e-7	At4g08260	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.72	89.7	1620416_at	CB342271	hypothetical protein LOC100245041	-	3e-1	At2g04890	SCL21 (SCARECROW-LIKE 21)	S.X.	H.G.	Please select
0.71	89.5	1619478_at	CD004753	hypothetical protein LOC100247440	-	3e-9	At5g12010	unknown protein	S.X.	H.G.	Please select
0.71	89.5	1622598_at	CF372747	hypothetical protein LOC100253485	-	3e-27	At5g22250	CCR4-NOT transcription complex protein, putative	S.X.	H.G.	Please select
0.69	88.3	1608256_at	CF404926	hypothetical protein LOC100265659	-	3e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.64	84.7	1612968_at	CF513560	hypothetical protein LOC100258721	-	1e+0	At1g80700	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.2	99.9	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
7.9	99.3	GSM436374	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.0	99.1	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
5.6	98.4	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.4	98.3	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	2e-53	206	1617574_at	CF403207	hypothetical protein LOC100253802	-	4e-1	At3g57770	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-1	34	1615008_at	AY036906.1	similar to Hsp70 interacting protein/thioredoxin chimera	-	1e-8	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	C.G.	S.X.	Please select
0.05	2e-1	34	1608569_s_at	CB968887	similar to Hsp70 interacting protein/thioredoxin chimera	-	1e-6	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select
0.03	7e-1	32	1622802_at	CD012590	-	-	1e+0	At5g26170	WRKY50	C.G.	S.X.	Please select
0.03	7e-1	32	1614727_at	CF203545.1	-	-	5e-13	At1g36050	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	32	1612521_s_at	CB977361	hypothetical protein LOC100267499	-	3e-1	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select
0.03	7e-1	32	1609366_at	CD012590	-	-	1e+0	At5g26170	WRKY50	C.G.	S.X.	Please select
0.02	3e+0	30	1621838_at	CD012562	hypothetical protein LOC100244363	-	2e+0	At5g23530	AtCXE18 (Arabidopsis thaliana carboxyesterase 18)	C.G.	S.X.	Please select
0.03	3e+0	30	1616937_at	CF201099.1	hypothetical protein LOC100257035	-	1e+0	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e+0	32	Arabidopsis thaliana	At2g18040	816316	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	36	Glycine max	Gma.5751.1.S1_at	BM523292	-	-	3e+0	At5g42965	nucleic acid binding / ribonuclease H	C.G.	S.X.	Please select
0.04	5e+0	30	Hordeum vulgare	Contig12316_at	Contig12316	-	-	7e+0	At5g15750	RNA-binding S4 domain-containing protein	C.G.	S.X.	Please select
0.05	5e+0	32	Oryza sativa	OsAffx.24452.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	Ptp.3125.1.S1_at	CA925531	-	-	3e-1	At2g39782	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-1	34	Triticum aestivum	Ta.17389.1.S1_at	CA620380	-	-	1e+1	At5g56670	40S ribosomal protein S30 (RPS30C)	C.G.	S.X.	Please select
0.04	2e+1	28	Zea mays	Zm.6267.1.A1_at	BG266199	-	-	4e+0	At1g80380	phosphoribulokinase/uridine kinase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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