Gene omics information

Query gene ID	1621416_at
Gene name	hypothetical protein LOC100263998
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1621416_at	CF514904	hypothetical protein LOC100263998	-	5e-94	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	S.X.	H.G.	Please select
0.51	73.2	1614828_at	CF415720	similar to Wound-induced basic protein	-	4e+0	At5g17360	-	S.X.	H.G.	Please select
0.48	68.8	1622486_at	CF510820	hypothetical protein LOC100247768	-	3e-13	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	S.X.	H.G.	Please select
0.42	60.1	1621995_at	BQ798187	hypothetical protein LOC100254996	-	1e-8	At4g24920	protein transport protein SEC61 gamma subunit, putative	S.X.	H.G.	Please select
0.39	54.9	1620501_at	CA817454	-	-	6e-23	At3g56020	60S ribosomal protein L41 (RPL41G)	S.X.	H.G.	Please select
0.36	50.7	1621567_at	BQ793310	hypothetical protein LOC100259466	-	1e-4	At2g37410	ATTIM17-2	S.X.	H.G.	Please select
0.35	48.5	1619273_s_at	CF201534.1	hypothetical protein LOC100254996	-	4e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	S.X.	H.G.	Please select
0.34	46.8	1609082_at	BQ793687	hypothetical protein LOC100242522	-	8e-5	At5g10350	polyadenylate-binding protein family protein / PABP family protein	S.X.	H.G.	Please select
0.30	39.4	1620490_at	CB971102	hypothetical protein LOC100246112	-	6e-1	At5g04170	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.29	37.7	1607702_at	CF518582	hypothetical protein LOC100257879	-	3e-8	At5g23535	KOW domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-66	252	1615710_s_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select
0.34	1e-66	252	1611948_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select
0.37	3e-49	194	1620778_at	CB342240	-	-	3e+0	At2g35635	UBQ7	C.G.	S.X.	Please select
0.12	3e-43	174	1622509_at	CD801486	-	-	2e-11	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	C.G.	S.X.	Please select
0.30	6e-32	137	1610105_at	CF206332.1	-	-	2e-77	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select
0.02	1e-2	40	1617354_at	CA816074	hypothetical protein LOC100263639	-	6e-121	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.04	1e-2	40	1609619_at	CB982264	hypothetical protein LOC100242237	-	5e-103	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.04	4e-2	38	1621785_at	CF213480	hypothetical protein LOC100242004	-	2e-101	At2g44610	RAB6A	C.G.	S.X.	Please select
0.01	2e-1	36	1610919_at	CA816890	hypothetical protein LOC100250818	-	2e-121	At5g20020	RAN2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	5e-94	345	Arabidopsis thaliana	At1g49300	841353	RABG3E (RAB GTPASE HOMOLOG G3E)	encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	4e-89	329	Glycine max	GmaAffx.89819.1.S1_s_at	CK606604	-	-	6e-61	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please select
0.38	2e-48	192	Hordeum vulgare	Contig3883_at	Contig3883	-	-	8e-43	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please select
0.37	8e-88	325	Oryza sativa	Os05g0516600	AY226827.1	-	Small GTP binding protein	1e-32	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	3e-179	628	Populus trichocarpa	Ptp.5091.1.A1_at	CV240473	-	-	1e-130	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	6e-69	262	Triticum aestivum	Ta.14396.1.S1_at	BJ214474	-	-	3e-58	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please select
0.33	2e-63	242	Zea mays	Zm.880.1.A1_at	CK986191	-	-	3e-52	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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