Gene omics information

Query gene ID	1621399_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1621399_s_at	CF372346	-	-	3e-13	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	S.X.	H.G.	Please select
0.80	93.6	1617061_s_at	CD003896	hypothetical protein LOC100243475	-	2e-15	At5g55220	trigger factor type chaperone family protein	S.X.	H.G.	Please select
0.78	92.6	1620684_at	CA811105	hypothetical protein LOC100244408	-	5e-10	At1g64510	ribosomal protein S6 family protein	S.X.	H.G.	Please select
0.65	85.0	1606797_at	CD714405	similar to 50S ribosomal protein L17, chloroplastic	-	3e-8	At3g54210	ribosomal protein L17 family protein	S.X.	H.G.	Please select
0.64	84.7	1610716_at	CF211147	hypothetical protein LOC100265925	-	5e-16	At3g15190	chloroplast 30S ribosomal protein S20, putative	S.X.	H.G.	Please select
0.61	83.2	1614655_at	CB969062	hypothetical protein LOC100267459	-	2e-61	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	S.X.	H.G.	Please select
0.60	81.9	1615609_at	CB971917	hypothetical protein LOC100268043	-	1e-11	At3g25920	RPL15	S.X.	H.G.	Please select
0.56	79.4	1617122_s_at	CB916811	hypothetical protein LOC100258002	-	8e-11	At2g38140	PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)	S.X.	H.G.	Please select
0.54	75.7	1607466_at	CF413978	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome	-	2e-17	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please select
0.53	75.2	1622495_at	BM436258	hypothetical protein LOC100248841	-	4e-26	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
6.3	98.8	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
4.9	97.9	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
4.9	97.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.7	97.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
4.4	97.3	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
4.4	97.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.3	97.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
4.2	97.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.2	97.1	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	3e-143	506	1612171_at	CF207050.1	-	-	1e-25	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please select
0.02	3e-1	34	1611303_at	CA816128	-	-	2e+0	At3g05725	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1611366_at	BQ800359	hypothetical protein LOC100246260	-	1e+0	At5g08185	MIR162A (MICRORNA 162A)	C.G.	S.X.	Please select
0.04	3e-1	34	1610065_at	CF373155	hypothetical protein LOC100260744	-	3e-1	At4g09775	-	C.G.	S.X.	Please select
0.02	3e-1	34	1608735_at	CF605804	-	-	3e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1608042_at	BQ799117	hypothetical LOC100249070	-	2e+0	At3g43300	ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)	C.G.	S.X.	Please select
0.03	1e+0	32	1619533_at	CD008559	-	-	5e+0	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	1619653_at	CF517251	hypothetical LOC100246762	-	1e+0	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1618932_s_at	CA815730	hypothetical protein LOC100267614	-	6e-65	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-13	75	Arabidopsis thaliana	At3g63190	825494	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	4e-47	188	Glycine max	Gma.13125.1.S1_at	CD409903	-	-	8e-68	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	S0001100180A07F1_at	S0001100180A07F1	-	-	1e-2	At3g44110	ATJ3	C.G.	S.X.	Please select
0.08	5e-4	46	Oryza sativa	Os07g0570700	AK065242.1	-	Ribosome recycling factor, chloroplast precursor(Ribosome releasing factor, chloroplast) (RRF) (CpFrr)(RRFHCP)	7e-13	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-36	153	Populus trichocarpa	Ptp.5343.1.S1_at	CV243373	hypothetical protein	-	2e-68	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	TaAffx.50854.1.S1_at	CA734639	-	-	2e+0	At5g46013	unknown protein	C.G.	S.X.	Please select
0.08	3e-5	48	Zea mays	Zm.16193.1.A1_at	CF058150	ribosome recycling factor	-	2e-10	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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