CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621366_s_at

Gene name hypothetical protein LOC100259669

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 93.7 1621366_s_at CF204284.1 hypothetical protein LOC100259669 - 4e-1 At3g20450 - S.X. H.G.
0.36 50.7 1608004_s_at CF207339 hypothetical protein LOC100250642 - 8e-15 At5g39800 60S ribosomal protein-related S.X. H.G.
0.33 45.7 1613869_at CB918601 hypothetical protein LOC100245425 - 6e-34 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) S.X. H.G.
0.31 41.3 1611903_at CB970856 hypothetical protein LOC100253792 - 1e-7 At5g18120 ATAPRL7 (APR-like 7) S.X. H.G.
0.30 39.4 1607420_at CF216066 - - 2e+0 At4g22115 SCRL14 (SCR-Like 14) S.X. H.G.
0.26 32.0 1617657_at CB976181 similar to Serine/threonine protein phosphatase 5 - 1e-21 At2g42810 PP5.2 (PROTEIN PHOSPHATASE 5.2) S.X. H.G.
0.18 19.4 1622644_at CB007566 hypothetical protein LOC100250337 - 6e-172 At2g42520 DEAD box RNA helicase, putative S.X. H.G.
0.16 16.7 1618853_at CD711659 hypothetical protein LOC100258103 - 1e+0 At4g39986 unknown protein S.X. H.G.
0.15 15.6 1614763_at CF513088 hypothetical protein LOC100246139 - 2e-23 At1g63660 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative S.X. H.G.
0.14 14.4 1607636_at CF405749 hypothetical protein LOC100259635 - 4e-104 At5g03240 UBQ3 (POLYUBIQUITIN 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 96.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3 95.2 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1 94.6 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1 94.6 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 0 948 1621137_at CB975552 hypothetical protein LOC100259669 - 1e-1 At1g48320 thioesterase family protein C.G. S.X.
0.03 1e-1 36 1613202_s_at CF514461 similar to SLY1 (SLEEPY1) - 9e+0 At5g44560 VPS2.2 C.G. S.X.
0.02 4e-1 34 1609750_at CF204394.1 - - 1e-16 At4g00170 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
0.02 2e+0 32 1620258_at AY427195.1 - - 2e-2 At1g14370 APK2A (PROTEIN KINASE 2A) C.G. S.X.
0.02 2e+0 32 1617447_at CB974795 - - 5e-38 At4g36760 ATAPP1 C.G. S.X.
0.02 2e+0 32 1609039_s_at CB974795 hypothetical protein LOC100242807 - 5e-38 At4g36760 ATAPP1 C.G. S.X.
0.02 2e+0 32 1607641_at AY427195.1 - - 2e-2 At1g14370 APK2A (PROTEIN KINASE 2A) C.G. S.X.
0.02 7e+0 30 1622117_at CF204223.1 - - 6e-34 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) C.G. S.X.
0.02 7e+0 30 1619222_at CF215786 - - 4e-1 At5g39540 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P - - - C.G. S.X.
0.13 6e-10 65 Glycine max GmaAffx.3706.1.S1_at BE821261 - - 4e-10 At1g48320 thioesterase family protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HV_CEa0007M14r2_at HV_CEa0007M14r2 - - 3e+0 At5g63740 zinc finger protein-related C.G. S.X.
0.02 1e+1 32 Oryza sativa Os08g0194200 9636.m00902 - - 2e-2 At1g23710 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.111718.1.S1_at CF230834 - - 1e-7 At5g02770 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum Ta.11952.3.S1_at BQ608323 - - 1e+0 At2g46150 - C.G. S.X.
0.03 3e+0 32 Zea mays Zm.9388.1.A1_at BM268498 - - 6e-2 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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