Gene omics information

Query gene ID	1621363_at
Gene name	hypothetical protein LOC100250687
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1621363_at	CA809467	hypothetical protein LOC100250687	-	5e-4	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	S.X.	H.G.	Please select
0.50	72.7	1609447_at	CA811171	hypothetical protein LOC100262687	-	2e-2	At5g59305	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1606588_s_at	CA811171	hypothetical protein LOC100262687	-	2e-2	At5g59305	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1611296_at	BM437675	hypothetical protein LOC100265112	-	4e-16	At4g22920	NYE1 (NON-YELLOWING 1)	S.X.	H.G.	Please select
0.00	0.5	1608073_s_at	CB968951	-	-	3e+0	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	S.X.	H.G.	Please select
0.00	0.5	1617130_at	CF212524	-	-	7e+0	At5g46350	WRKY8	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.4	100.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
19.0	99.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
9.4	99.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.2	99.1	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.4	98.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	5e-174	609	1613920_at	CB979957	hypothetical protein LOC100260935	-	2e+0	At1g07830	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.02	4e-5	48	1616191_s_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.02	4e-5	48	1610821_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.03	2e-4	46	1610935_at	CF404728	hypothetical protein LOC100259359	-	3e-1	At3g48270	CYP71A26	C.G.	S.X.	Please select
0.02	2e+0	32	1621376_at	CB004390	-	-	3e-1	At5g19257	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619701_at	BM437347	hypothetical protein LOC100249763	-	1e-3	At2g43070	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	1616862_at	CB343429	hypothetical protein LOC100250930	-	1e+0	At2g19385	zinc ion binding	C.G.	S.X.	Please select
0.02	2e+0	32	1616168_at	CA814413	hypothetical protein LOC100258564	-	3e-14	At1g52870	peroxisomal membrane protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	1614714_at	CD714898	-	-	1e-11	At1g64950	CYP89A5	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-4	46	Arabidopsis thaliana	At1g13080	837865	CYP71B2 (CYTOCHROME P450 71B2)	cytochrome P450 monooxygenase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-4	46	Glycine max	GmaAffx.93309.1.S1_s_at	CF808307	-	-	1e-5	At4g22710	CYP706A2	C.G.	S.X.	Please select
0.06	1e+0	34	Hordeum vulgare	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	46	Oryza sativa	OsAffx.20701.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-13	77	Populus trichocarpa	PtpAffx.224493.1.S1_at	pmrna43078	cytochrome P450	-	2e-1	At5g57260	CYP71B10	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-2	40	Triticum aestivum	TaAffx.29085.1.S1_at	CA650627	-	-	7e-8	At2g45570	CYP76C2	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	ZmAffx.1181.1.S1_at	AW927689	-	-	2e-1	At5g56140	KH domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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