CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621350_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621350_at CD009838 - - 5e+0 At5g52965 unknown protein S.X. H.G.
0.08 8.5 1617031_at CD010341 - - 4e-2 At4g02405 unknown protein S.X. H.G.
0.01 2.1 1607317_at CB975740 - - 3e-10 At1g54690 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) S.X. H.G.
0.00 0.5 1615884_at CD719536 - - 6e-3 At5g53260 seed maturation family protein S.X. H.G.
0.00 0.5 1611777_at CF372493 hypothetical protein LOC100257652 - 1e-12 At5g50810 TIM8 S.X. H.G.
0.00 0.5 1607928_at CF201793.1 - - 5e-3 At4g08230 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.7 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
9.5 99.6 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.3 99.6 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
8.8 99.5 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.9 99.3 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
7.4 99.2 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
7.3 99.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.6 98.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.3 98.8 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1225 1608739_at CD009838 - - 5e+0 At5g52965 unknown protein C.G. S.X.
0.03 4e-1 34 1619962_at CD719567 - - 3e-1 At5g47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative C.G. S.X.
0.03 4e-1 34 1614691_at CF517438 - - 1e+0 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.03 4e-1 34 1607322_at CD719567 - - 3e-1 At5g47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative C.G. S.X.
0.03 2e+0 32 1611535_at CA810934 - - 9e-29 At4g26600 nucleolar protein, putative C.G. S.X.
0.03 2e+0 32 1610280_at BQ795259 - - 2e-1 At2g19820 LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9) C.G. S.X.
0.02 2e+0 32 1609896_at CD798234 hypothetical protein LOC100246650 - 1e-13 At1g79390 unknown protein C.G. S.X.
0.02 6e+0 30 1622171_at CB975783 hypothetical protein LOC100244384 - 6e-28 At5g60670 60S ribosomal protein L12 (RPL12C) C.G. S.X.
0.03 6e+0 30 1620719_at CD011034 - - 3e-1 At4g19840 ATPP2-A1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At5g52965 835374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.05 2e+0 34 Glycine max Gma.5277.1.S1_at BM091884 - - 5e-2 At3g59870 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEm0021O22r2_x_at HVSMEm0021O22r2 - - 4e-4 At5g58400 peroxidase, putative C.G. S.X.
0.02 2e-1 38 Oryza sativa Os04g0534100 AK103012.1 - Arabidopsis thaliana protein of unknown functionDUF821 family protein 1e-12 At1g63420 - C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.206479.1.S1_at pmrna12846 hypothetical protein - 4e+0 At3g49920 VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.5059.1.S1_at CA724035 - - 9e-1 At1g21975 unknown protein C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.1126.1.A1_at AW313158 - - 3e+0 At2g28605 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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