Gene omics information

Query gene ID	1621277_at
Gene name	hypothetical protein LOC100252641
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.1	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.67	87.9	1614388_at	CF210132	hypothetical protein LOC100241529	-	2e-1	At2g21610	pectinesterase family protein	S.X.	H.G.	Please select
0.61	83.2	1607804_at	CB004035	-	-	2e-45	At1g16270	protein kinase family protein	S.X.	H.G.	Please select
0.50	72.7	1615915_at	CF518741	hypothetical protein LOC100267889	-	4e+0	At2g24880	self-incompatibility protein-related	S.X.	H.G.	Please select
0.44	64.1	1618259_at	BM436271	hypothetical LOC100245758	-	3e-32	At5g65780	ATBCAT-5	S.X.	H.G.	Please select
0.38	53.6	1615660_at	CF215672	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	1e-51	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.0	99.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.9	99.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.0	99.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.2	99.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.7	99.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.3	99.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.4	99.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	3e-26	117	1615065_at	CB982897	similar to mitochondrial substrate carrier family protein	-	7e-28	At1g72820	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1613387_at	CB971364	hypothetical protein LOC100251150	-	1e-25	At5g01460	LMBR1 integral membrane family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1607119_at	CD799254	hypothetical protein LOC100247980	-	6e-71	At1g78920	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	C.G.	S.X.	Please select
0.03	1e+0	32	1622111_at	CB970952	hypothetical protein LOC100242512	-	1e-3	At3g04470	-	C.G.	S.X.	Please select
0.03	1e+0	32	1622040_at	BQ792586	hypothetical protein LOC100240925	-	6e+0	At3g13580	60S ribosomal protein L7 (RPL7D)	C.G.	S.X.	Please select
0.03	1e+0	32	1617226_s_at	BQ792586	hypothetical protein LOC100240925	-	6e+0	At3g13580	60S ribosomal protein L7 (RPL7D)	C.G.	S.X.	Please select
0.02	1e+0	32	1613057_at	CD711210	hypothetical protein LOC100264968	-	3e-95	At2g04030	CR88	C.G.	S.X.	Please select
0.02	1e+0	32	1606945_at	CF513943	-	-	3e-11	At1g05055	GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)	C.G.	S.X.	Please select
0.03	6e+0	30	1621189_at	BQ793238	-	-	2e-5	At5g07120	SNX2b (SORTING NEXIN 2b)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-24	113	Arabidopsis thaliana	At1g72820	843613	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	8e-18	91	Glycine max	Gma.17955.1.S1_s_at	BM307749	-	-	3e-31	At1g72820	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.07	1e-5	50	Hordeum vulgare	Contig26293_at	Contig26293	-	-	2e+0	At5g37580	-	C.G.	S.X.	Please select
0.04	1e-5	52	Oryza sativa	Os09g0444700	AK120833.1	-	Mitochondrial carrier-like protein	2e-1	At2g28920	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	6e-25	115	Populus trichocarpa	PtpAffx.22200.1.S1_a_at	CV239849	hypothetical protein	-	3e-20	At5g26200	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-5	50	Triticum aestivum	Ta.6342.1.S1_at	BJ302601	-	-	1e+1	At5g15581	unknown protein	C.G.	S.X.	Please select
0.09	9e-6	50	Zea mays	ZmAffx.106.1.A1_at	AI665540	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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