CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621270_at

Gene name hypothetical protein LOC100252531

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621270_at CB971990 hypothetical protein LOC100252531 - 4e-4 At5g11590 TINY2 (TINY2) S.X. H.G.
0.57 79.8 1619478_at CD004753 hypothetical protein LOC100247440 - 3e-9 At5g12010 unknown protein S.X. H.G.
0.50 72.7 1609113_s_at BQ800383 hypothetical protein LOC100266637 - 3e-2 At1g71780 unknown protein S.X. H.G.
0.50 72.7 1606741_at CF200678.1 hypothetical protein LOC100250551 - 5e+0 At3g20155 unknown protein S.X. H.G.
0.43 61.5 1615403_at CD798952 hypothetical protein LOC100255828 - 2e-1 At1g35537 - S.X. H.G.
0.30 39.4 1608966_at CB982651 hypothetical protein LOC100256404 - 2e-4 At5g59550 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.3 99.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
14.2 99.9 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
10.4 99.7 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
9.2 99.5 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
8.1 99.4 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.8 99.3 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.9 98.6 GSM436417 V. riparia (VR, PI588259) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.9 98.6 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 34 1618952_at CF405185 - - 7e-1 At4g18890 brassinosteroid signalling positive regulator-related C.G. S.X.
0.02 5e-1 34 1612372_at CA814720 hypothetical protein LOC100247951 - 3e-2 At5g67010 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 2e+0 32 1621951_at BQ795175 hypothetical protein LOC100252259 - 3e-1 At5g38050 unknown protein C.G. S.X.
0.02 2e+0 32 1619544_at CK138178.1 - - 7e-24 At5g17020 XPO1A C.G. S.X.
0.01 2e+0 32 1617423_at CB969252 hypothetical protein LOC100245065 - 5e-8 At1g10360 ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18) C.G. S.X.
0.02 2e+0 32 1617012_at CD802399 hypothetical protein LOC100252609 - 1e-17 At5g25190 ethylene-responsive element-binding protein, putative C.G. S.X.
0.02 2e+0 32 1616096_s_at CA809473 hypothetical protein LOC100241260 - 5e-16 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) C.G. S.X.
0.02 2e+0 32 1614787_at CF207564 hypothetical protein LOC100241423 - 1e-18 At2g27900 unknown protein C.G. S.X.
0.02 2e+0 32 1614381_at CD713830 - - 9e+0 At5g54930 AT hook motif-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 4e-4 46 Arabidopsis thaliana At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. - - - C.G. S.X.
0.16 1e-5 52 Glycine max GmaAffx.17408.1.A1_at BE805951 - - 2e-5 At1g63030 ddf2 (DWARF AND DELAYED FLOWERING 2) C.G. S.X.
0.03 3e-3 42 Hordeum vulgare Contig15617_at Contig15617 - - 4e-1 At2g25820 transcription factor C.G. S.X.
0.11 9e-7 56 Oryza sativa Os10g0560700 AK064207.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-2 At3g06870 proline-rich family protein C.G. S.X.
0.25 3e-30 133 Populus trichocarpa PtpAffx.218700.1.S1_at pmrna34416 AP2/ERF domain-containing transcription factor - 3e-6 At2g25820 transcription factor C.G. S.X.
0.09 5e-4 46 Triticum aestivum TaAffx.15675.1.A1_at CD490321 - - 2e-13 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.08 2e-13 75 Zea mays Zm.9418.1.S1_at AF493799.1 DREB-like protein - 4e-2 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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