Gene omics information

Query gene ID	1621260_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1621260_at	BQ797265	-	-	3e-1	At4g30630	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	S.X.	H.G.	Please select
0.38	53.6	1613790_at	BQ799915	hypothetical protein LOC100258406	-	4e-88	At5g47780	GAUT4 (Galacturonosyltransferase 4)	S.X.	H.G.	Please select
0.26	32.0	1610599_at	CF211001	hypothetical protein LOC100250338	-	7e+0	At5g16790	-	S.X.	H.G.	Please select
0.24	28.7	1619177_at	CD720160	hypothetical protein LOC100265301	-	5e+0	At4g26030	transcription factor	S.X.	H.G.	Please select
0.20	22.4	1608769_at	BM437199	hypothetical protein LOC100253272	-	5e+0	At5g44306	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.7	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
3.8	96.4	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.4	95.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
3.2	94.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
3.1	94.6	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.8	93.4	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
2.7	93.0	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1620145_at	CD004457	-	-	9e-5	At5g66550	Maf family protein	C.G.	S.X.	Please select
0.04	3e-1	34	1607692_at	CF210102	-	-	1e+0	At2g14760	basic helix-loop-helix protein / bHLH protein	C.G.	S.X.	Please select
0.03	3e-1	34	1606660_at	CD004457	hypothetical protein LOC100242728	-	9e-5	At5g66550	Maf family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1620938_at	CA817950	hypothetical LOC100248291	-	1e+0	At1g78220	GRF13	C.G.	S.X.	Please select
0.03	1e+0	32	1620500_at	CB349662	hypothetical protein LOC100256536	-	1e-3	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.03	1e+0	32	1620339_at	CB834219	-	-	3e-1	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	C.G.	S.X.	Please select
0.03	1e+0	32	1618350_at	CB004423	-	-	1e-3	At1g12930	importin-related	C.G.	S.X.	Please select
0.02	1e+0	32	1618370_at	CF510718	hypothetical protein LOC100242802	-	8e-31	At4g12800	PSAL (photosystem I subunit L)	C.G.	S.X.	Please select
0.03	1e+0	32	1616552_at	CB834219	-	-	3e-1	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g30630	829186	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.37199.1.S1_at	CA782760	-	-	2e-5	At2g37790	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HVSMEg0009E19r2_s_at	HVSMEg0009E19r2	-	-	1e+1	At5g05000	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os07g0647300	NM_185917.1	-	Mitochondrial import inner membrane translocase,subunit Tim44 family protein	2e+0	At1g58055	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	Ptp.7054.1.S1_at	DN487831	hypothetical protein	-	5e-16	At4g14965	AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	Ta.13682.1.A1_at	BQ171887	-	-	2e-1	At4g24220	VEP1 (VEIN PATTERNING 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.485.1.S1_at	AI691349	-	-	8e-1	Atmg00140	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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