CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621252_at

Gene name hypothetical protein LOC100263936

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621252_at CB978314 hypothetical protein LOC100263936 - 2e-8 At3g08620 KH domain-containing protein S.X. H.G.
0.73 90.8 1613084_at CB979577 hypothetical protein LOC100261680 - 5e-7 At5g46190 KH domain-containing protein S.X. H.G.
0.61 83.2 1607119_at CD799254 hypothetical protein LOC100247980 - 6e-71 At1g78920 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) S.X. H.G.
0.55 77.3 1618813_at CB970187 hypothetical protein LOC100263840 - 2e+0 At1g69828 - S.X. H.G.
0.50 72.7 1614110_s_at CD801616 cullin 1 - 2e-19 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) S.X. H.G.
0.38 53.6 1613769_at CB970019 hypothetical protein LOC100265267 - 4e-48 At1g51690 ATB ALPHA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.1 89.1 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1609868_at CF201186.1 hypothetical protein LOC100262250 - 1e-3 At5g06660 unknown protein C.G. S.X.
0.03 1e+0 32 1619803_at BQ796908 hypothetical protein LOC100242666 - 2e-2 At4g14930 acid phosphatase survival protein SurE, putative C.G. S.X.
0.02 5e+0 30 1621071_at CA811292 hypothetical LOC100245839 - 4e-48 At2g32260 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative C.G. S.X.
0.03 5e+0 30 1619868_at CF414710 hypothetical protein LOC100260310 - 3e+0 At3g57960 emsy N terminus domain-containing protein / ENT domain-containing protein C.G. S.X.
0.02 5e+0 30 1619350_at CB838046 - - 5e+0 At5g06430 thioredoxin-related C.G. S.X.
0.03 5e+0 30 1618375_at CB342345 - - 4e+0 At5g23640 unknown protein C.G. S.X.
0.01 5e+0 30 1618004_s_at CB339217 AlaT1 - 2e-110 At1g70580 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) C.G. S.X.
0.02 5e+0 30 1616303_a_at CF212684 hypothetical protein LOC100241801 - 8e-12 At1g28960 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) C.G. S.X.
0.02 5e+0 30 1616094_at CF372451 MYBPA1 protein - 5e-8 At1g18570 MYB51 (MYB DOMAIN PROTEIN 51) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-8 59 Arabidopsis thaliana At3g08620 820009 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO - - - C.G. S.X.
0.32 2e-52 206 Glycine max Gma.8009.1.S1_at AW185849 - - 6e-16 At3g08620 KH domain-containing protein C.G. S.X.
0.12 2e-9 61 Hordeum vulgare Contig8007_at Contig8007 - - 8e-1 At2g38610 KH domain-containing protein C.G. S.X.
0.15 3e-18 93 Oryza sativa Os07g0227400 AK069634.1 - RNA binding/signal transduction protein QkI-4 3e-9 At3g08620 KH domain-containing protein C.G. S.X.
0.25 2e-70 266 Populus trichocarpa PtpAffx.27199.1.A1_at DN486385 hypothetical protein - 6e-39 At3g08620 KH domain-containing protein C.G. S.X.
0.12 3e-10 65 Triticum aestivum TaAffx.36144.1.S1_s_at CA742002 - - 1e-5 At3g08620 KH domain-containing protein C.G. S.X.
0.15 1e-1 36 Zea mays Zm.2949.1.A1_at CK144458 nucleic acid binding protein - 3e-6 At2g38610 KH domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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