CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621244_s_at

Gene name hypothetical protein LOC100246875

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.83 94.6 1618561_at CF204500.1 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.83 94.6 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) S.X. H.G.
0.80 93.6 1622012_at CF204966.1 - - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.77 92.3 1617334_s_at CF607954 - - 1e-9 At5g65660 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.71 89.5 1620319_s_at CF205531.1 R2R3 Myb14 transcription factor - 9e-2 At4g11660 AT-HSFB2B S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.1 100.0 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
23.9 100.0 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
19.7 99.9 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
19.0 99.9 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.2 99.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.5 99.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
16.8 99.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.8 99.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.9 99.9 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.6 99.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 674 1618561_at CF204500.1 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 8e-11 65 1622195_at CB969266 hypothetical protein LOC100248937 - 3e-15 At4g07990 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.04 1e-9 61 1606513_s_at CB981864 similar to Stress-related protein - 2e+0 At2g47780 rubber elongation factor (REF) protein-related C.G. S.X.
0.04 5e-9 59 1621663_at CF211908 - - 5e-1 At4g04650 - C.G. S.X.
0.04 5e-9 59 1621610_at CF372731 - - 8e-6 At4g28240 wound-responsive protein-related C.G. S.X.
0.04 5e-9 59 1614437_at CF406008 - - 5e-1 At3g25882 NIMIN-2 (NIM1-INTERACTING 2) C.G. S.X.
0.06 5e-9 59 1609218_at BM437324 - - 3e-1 At4g40030 histone H3.2 C.G. S.X.
0.06 2e-8 57 1618494_at CF405291 hypothetical protein LOC100264126 - 7e-5 At1g18010 - C.G. S.X.
0.06 2e-8 57 1614558_at CF214381 hypothetical protein LOC100252287 - 1e-3 At1g09750 chloroplast nucleoid DNA-binding protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-5 50 Arabidopsis thaliana At3g03980 819553 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV - - - C.G. S.X.
0.07 5e-3 42 Glycine max GmaAffx.93030.1.S1_s_at CF808755 - - 9e-2 At5g18210 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig23929_at Contig23929 - - 3e+0 At4g01850 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) C.G. S.X.
0.06 5e-1 36 Oryza sativa Os07g0561500 9635.m03710 - Brn1-like protein 2e+0 At5g55570 unknown protein C.G. S.X.
0.11 1e-6 54 Populus trichocarpa Ptp.7160.2.A1_a_at CV239819 hypothetical protein - 1e+0 At3g04000 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.06 4e-3 42 Triticum aestivum Ta.11888.2.S1_at BQ170995 - - 4e+0 At2g17556 unknown protein C.G. S.X.
0.03 6e+0 30 Zea mays Zm.9216.1.A1_at BM267379 hypothetical protein LOC100276794 - 9e-2 At5g44380 FAD-binding domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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