Gene omics information

Query gene ID	1621225_at
Gene name	hypothetical LOC100250089
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.5	1621225_at	CB974537	hypothetical LOC100250089	-	1e-15	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	S.X.	H.G.	Please select
0.60	81.9	1614520_s_at	BQ794149	hypothetical protein LOC100252479	-	5e+0	At3g55672	-	S.X.	H.G.	Please select
0.50	72.7	1609853_at	CB982611	hypothetical protein LOC100254798	-	5e-75	At2g18230	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	S.X.	H.G.	Please select
0.43	61.5	1615933_at	CF510942	hypothetical protein LOC100241901	-	1e+0	At5g17690	TFL2 (TERMINAL FLOWER 2)	S.X.	H.G.	Please select
0.40	57.7	1622624_at	BQ797682	-	-	4e-37	At1g75210	5' nucleotidase family protein	S.X.	H.G.	Please select
0.32	43.1	1621931_at	CF210459	hypothetical protein LOC100265095	-	1e-1	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	S.X.	H.G.	Please select
0.24	28.7	1608859_at	BQ795182	-	-	8e-8	At5g64460	-	S.X.	H.G.	Please select
0.19	20.9	1611885_at	CB343939	hypothetical protein LOC100263250	-	6e-27	At1g06820	CRTISO (CAROTENOID ISOMERASE)	S.X.	H.G.	Please select
0.13	13.3	1609810_at	CF608775	hypothetical protein LOC100245397	-	3e-32	At4g08900	arginase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	99.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.1	99.1	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.6	98.9	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.5	98.9	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.9	98.6	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.7	98.5	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	32	1619324_at	CF513718	hypothetical protein LOC100249269	-	4e-85	At5g57020	NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)	C.G.	S.X.	Please select
0.03	5e+0	30	1621704_at	CD801870	-	-	4e+0	At2g05140	phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1621555_at	CB978349	hypothetical protein LOC100255345	-	4e-13	At3g45850	kinesin motor protein-related	C.G.	S.X.	Please select
0.03	5e+0	30	1621587_at	CF214129	adenosine 5'-phosphosulfate reductase	-	8e-11	At4g21990	APR3 (APS REDUCTASE 3)	C.G.	S.X.	Please select
0.02	5e+0	30	1620713_s_at	CB970375	flavonoid-related R2R3 MYB 4a repressor transcription factor	-	3e-58	At4g38620	MYB4	C.G.	S.X.	Please select
0.02	5e+0	30	1620219_at	CB007633	hypothetical protein LOC100247027	-	2e+0	At3g14560	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1616413_at	AF003007.1	VVTL1	-	4e-5	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.03	5e+0	30	1616163_at	CF371751	hypothetical protein LOC100263636	-	4e+0	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	1615368_at	CF204370.1	hypothetical protein LOC100250021	-	4e-13	At2g44860	60S ribosomal protein L24, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-15	83	Arabidopsis thaliana	At4g23820	828482	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.11136.1.A1_at	CD396517	-	-	3e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	C.G.	S.X.	Please select
0.02	8e+0	30	Hordeum vulgare	rbags22j23_at	rbags22j23	-	-	5e+0	At5g17130	cysteine-type peptidase	C.G.	S.X.	Please select
0.03	9e-3	42	Oryza sativa	OsAffx.18167.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-2	40	Populus trichocarpa	PtpAffx.5923.1.S1_at	CV229264	hypothetical protein	-	2e-38	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.108030.1.S1_at	CA692248	-	-	9e-1	At5g11600	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.717.1.A1_at	AI739812	-	-	8e-1	At3g07565	DNA binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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