CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621155_at

Gene name hypothetical protein LOC100248478

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) S.X. H.G.
0.50 72.7 1616450_at BQ797532 hypothetical protein LOC100264578 - 3e-23 At1g48790 mov34 family protein S.X. H.G.
0.44 64.1 1613432_at CF516959 hypothetical protein LOC100244217 - 1e-15 At1g67680 7S RNA binding S.X. H.G.
0.40 57.7 1622077_s_at CF372353 hypothetical protein LOC100249199 - 3e-21 At3g27430 PBB1 S.X. H.G.
0.36 50.7 1617806_at BQ797048 hypothetical protein LOC100249540 - 4e-10 At2g39990 EIF2 S.X. H.G.
0.29 37.7 1618348_at CF373264 hypothetical protein LOC100265921 - 1e-47 At5g45750 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 91.3 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.2 89.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-5 48 1621004_at CF515809 hypothetical protein LOC100243572 - 3e-21 At2g47580 U1A (SPLICEOSOMAL PROTEIN U1A) C.G. S.X.
0.02 6e-1 34 1610562_at CF514967 hypothetical protein LOC100249618 - 4e-32 At2g39130 amino acid transporter family protein C.G. S.X.
0.02 2e+0 32 1622573_at CF214631 hypothetical protein LOC100266218 - 4e-1 Atcg00070 - C.G. S.X.
0.01 2e+0 32 1620315_at CF604880 - - 3e-6 At2g36480 zinc finger (C2H2-type) family protein C.G. S.X.
0.02 2e+0 32 1619939_at CB971326 - - 2e+1 At5g43430 ETFBETA C.G. S.X.
0.02 2e+0 32 1616480_at CF205176.1 - - 3e-2 At1g23147 RALFL3 (RALF-LIKE 3) C.G. S.X.
0.02 2e+0 32 1615591_at CD799009 - - 2e+0 At2g29460 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) C.G. S.X.
0.02 2e+0 32 1612953_at CF606754 hypothetical LOC100254354 - 2e+0 At2g20450 60S ribosomal protein L14 (RPL14A) C.G. S.X.
0.01 2e+0 32 1612487_at CB981514 hypothetical protein LOC100247157 - 6e-1 At2g39060 nodulin MtN3 family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 8e-34 145 Arabidopsis thaliana At2g30260 817576 U2B'' (U2 small nuclear ribonucleoprotein B) encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. - - - C.G. S.X.
0.34 1e-54 214 Glycine max GmaAffx.58650.1.S1_at BE021790 - - 3e-28 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.04 7e-8 57 Hordeum vulgare Contig7570_at Contig7570 - - 1e-7 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.05 7e-11 69 Oryza sativa Os.12051.1.S1_at - - - 0 C.G. S.X.
0.21 3e-49 196 Populus trichocarpa PtpAffx.9494.1.S1_at DN491329 hypothetical protein - 1e-26 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.06 5e-4 46 Triticum aestivum TaAffx.30652.1.S1_at CA623146 - - 3e-4 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.14 2e-10 65 Zea mays Zm.16475.4.S1_at BG841751 - - 1e-3 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage