Gene omics information

Query gene ID	1621150_at
Gene name	hypothetical protein LOC100248338
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1621150_at	CF516004	hypothetical protein LOC100248338	-	1e-8	At5g39040	ATTAP2	S.X.	H.G.	Please select
0.50	72.7	1619005_at	CF206493.1	-	-	3e-14	At5g46410	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.50	72.7	1612501_at	CB008614	with no lysine kinase	-	2e+0	At5g62050	OXA1	S.X.	H.G.	Please select
0.25	30.5	1617187_at	CB973607	hypothetical protein LOC100254109	-	3e-4	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.23	27.5	1622463_at	CB977897	hypothetical protein LOC100252976	-	2e-22	At1g21065	unknown protein	S.X.	H.G.	Please select
0.21	24.0	1616171_at	BM437490	hypothetical protein LOC100251471	-	3e-18	At5g48380	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.4	95.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
3.0	94.2	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.8	93.4	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.7	93.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
2.6	92.5	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	1612049_at	CD007708	-	-	2e-21	At1g70610	ATTAP1	C.G.	S.X.	Please select
0.03	6e-2	38	1608273_at	CD007708	hypothetical protein LOC100249410	-	2e-21	At1g70610	ATTAP1	C.G.	S.X.	Please select
0.02	2e-1	36	1621559_at	CF415172	hypothetical protein LOC100262734	-	3e-51	At3g28860	ABCB19	C.G.	S.X.	Please select
0.02	2e-1	36	1613372_at	CF514636	similar to P-glycoprotein	-	2e-5	At1g06070	bZIP transcription factor, putative (bZIP69)	C.G.	S.X.	Please select
0.02	2e-1	36	1612101_s_at	CF604970	hypothetical protein LOC100246433	-	1e+0	At1g31170	SRX (SULFIREDOXIN)	C.G.	S.X.	Please select
0.02	2e-1	36	1608714_at	CF208363	hypothetical protein LOC100262262	-	5e-1	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please select
0.02	9e-1	34	1620789_s_at	CF414942	hypothetical protein LOC100249845	-	8e-1	At5g22520	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	1620286_at	CF414942	-	-	8e-1	At5g22520	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	1617919_at	CF605842	hypothetical protein LOC100261876	-	2e+0	At4g26830	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-8	61	Arabidopsis thaliana	At5g39040	833896	ATTAP2	member of TAP subfamily	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	7e-76	286	Glycine max	GmaAffx.51436.2.S1_s_at	BU577819	-	-	1e-2	At5g39040	ATTAP2	C.G.	S.X.	Please select
0.18	6e-31	135	Hordeum vulgare	AY013246_CDS-5_at	AY013246_CDS-5	-	-	3e-22	At5g39040	ATTAP2	C.G.	S.X.	Please select
0.04	1e-16	89	Oryza sativa	Os03g0755100	AK066049.1	-	Transporter associated with antigenprocessing-like protein	3e-23	At5g39040	ATTAP2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.58	0	811	Populus trichocarpa	PtpAffx.215757.1.S1_s_at	pmrna30137	ABC transporter family protein /// ABC transporter family protein /// ABC transporter family protein	-	1e-27	At5g39040	ATTAP2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	1e-30	135	Triticum aestivum	Ta.4257.1.S1_at	CK159198	-	-	1e-18	At5g39040	ATTAP2	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.4236.1.A1_at	AI978036	-	-	5e-11	At1g70610	ATTAP1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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