CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621149_at

Gene name similar to 60S ribosomal protein L19

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621149_at CF514701 similar to 60S ribosomal protein L19 - 3e-79 At1g02780 emb2386 (embryo defective 2386) S.X. H.G.
0.67 87.9 1615194_at CF373310 hypothetical protein LOC100256025 - 3e-29 At1g77940 60S ribosomal protein L30 (RPL30B) S.X. H.G.
0.53 75.2 1610139_s_at CF211851 hypothetical protein LOC100253227 - 2e-24 At4g10450 60S ribosomal protein L9 (RPL90D) S.X. H.G.
0.53 75.2 1610092_at BQ794603 hypothetical protein LOC100250286 - 2e-18 At5g18380 40S ribosomal protein S16 (RPS16C) S.X. H.G.
0.50 72.7 1607915_at CF214306 hypothetical protein LOC100246504 - 4e-50 At2g39460 RPL23AA (RIBOSOMAL PROTEIN L23AA) S.X. H.G.
0.46 66.5 1607259_s_at CF511061 hypothetical protein LOC100242794 - 7e-65 At2g44120 60S ribosomal protein L7 (RPL7C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.2 89.9 GSM436375 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436374 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436421 V. riparia (VR, PI588259) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436395 V. riparia (VR, PI588259) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 1e-119 428 1621492_at CB978828 similar to 60S ribosomal protein L19 - 4e-66 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.16 2e-47 188 1621749_x_at CF569214.1 - - 1e+0 At4g29960 unknown protein C.G. S.X.
0.16 2e-47 188 1616660_s_at CF569214.1 similar to 60S ribosomal protein L19 - 1e+0 At4g29960 unknown protein C.G. S.X.
0.16 2e-47 188 1615674_at CF569214.1 - - 1e+0 At4g29960 unknown protein C.G. S.X.
0.16 2e-47 188 1611884_at CF569214.1 - - 1e+0 At4g29960 unknown protein C.G. S.X.
0.02 4e-2 38 1613877_at BQ800323 hypothetical protein LOC100244974 - 1e+0 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.03 6e-1 34 1613721_at CF372597 hypothetical protein LOC100264633 - 2e-19 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) C.G. S.X.
0.01 6e-1 34 1611167_at CD007118 hypothetical protein LOC100250725 - 2e-50 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) C.G. S.X.
0.02 2e+0 32 1622400_at BQ796203 hypothetical protein LOC100262534 - 1e-3 At2g23390 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 3e-79 295 Arabidopsis thaliana At1g02780 839407 emb2386 (embryo defective 2386) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFP - - - C.G. S.X.
0.49 1e-116 420 Glycine max GmaAffx.91192.1.S1_s_at CF806917 - - 5e-59 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
0.27 1e-77 289 Hordeum vulgare Contig1600_s_at Contig1600 - - 1e-50 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.24 2e-76 287 Oryza sativa Os03g0337800 AK102721.1 - 60S ribosomal protein L19 (Fragment) 2e-43 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
0.50 9e-136 484 Populus trichocarpa PtpAffx.2197.3.S1_a_at CV239402 - - 2e-55 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.28 7e-62 238 Triticum aestivum Ta.2739.2.A1_x_at CK165923 - - 1e-50 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.37 4e-52 204 Zea mays Zm.7165.1.A1_at CF635373 60S ribosomal protein L19-3 - 4e-17 At4g02230 60S ribosomal protein L19 (RPL19C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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