Gene omics information

Query gene ID	1621144_at
Gene name	hypothetical protein LOC100257210
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1621144_at	CA816855	hypothetical protein LOC100257210	-	2e+0	At3g29636	transferase-related	S.X.	H.G.	Please select
0.53	75.2	1617194_at	BQ794485	hypothetical protein LOC100264514	-	5e-1	At5g37520	unknown protein	S.X.	H.G.	Please select
0.51	73.2	1612995_at	CD012259	-	-	4e-18	At3g13340	WD-40 repeat family protein	S.X.	H.G.	Please select
0.42	60.1	1612817_at	CB002820	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.40	57.7	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	S.X.	H.G.	Please select
0.33	45.7	1616840_at	CF608637	hypothetical protein LOC100255499	-	9e-15	At1g09140	SF2/ASF-like splicing modulator (SRP30)	S.X.	H.G.	Please select
0.30	39.4	1619289_at	CB340785	hypothetical protein LOC100242328	-	1e+0	At4g16265	NRPB9B	S.X.	H.G.	Please select
0.27	34.0	1614869_at	CF208077	hypothetical protein LOC100251847	-	1e-12	At1g50500	HIT1 (HEAT-INTOLERANT 1)	S.X.	H.G.	Please select
0.23	27.5	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.22	25.6	1616981_at	CB971105	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436404	V. riparia (VR, PI588259) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	1610153_at	CD717599	-	-	5e+0	At4g17585	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	1607299_at	CA817215	-	-	4e+0	At3g28321	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620363_at	CF519177	hypothetical protein LOC100265857	-	2e+0	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1612911_at	CB970238	hypothetical protein LOC100251046	-	6e-3	At3g22540	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1612578_at	CB342521	-	-	1e+1	At5g63905	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	1622682_at	CB001944	hypothetical protein LOC100256501	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	C.G.	S.X.	Please select
0.02	1e+1	30	1622395_s_at	CF514131	hypothetical protein LOC100266306	-	4e-1	At2g37870	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	1e+1	30	1621961_at	BQ798768	-	-	1e+0	At3g09700	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e+1	30	1621873_at	CA817157	-	-	1e+0	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g29636	822635	transferase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	Gma.3994.1.S1_at	BQ453570	-	-	2e-1	At3g48540	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	Contig3815_at	Contig3815	-	-	9e-21	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.06	3e-4	48	Oryza sativa	Os08g0477600	AK069216.1	-	Conserved hypothetical protein	5e-1	At1g75560	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	9e-19	95	Populus trichocarpa	PtpAffx.204656.1.S1_x_at	pmrna9158	hypothetical protein	-	2e+0	At2g04790	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e-1	36	Triticum aestivum	TaAffx.8174.2.A1_at	CA633061	-	-	4e+0	At3g60410	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.8758.1.A1_at	BM337189	-	-	6e+0	At1g26260	CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage