Gene omics information

Query gene ID	1621076_at
Gene name	hypothetical protein LOC100257150
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1621076_at	CF207338	hypothetical protein LOC100257150	-	6e-16	At1g74050	60S ribosomal protein L6 (RPL6C)	S.X.	H.G.	Please select
0.55	77.3	1616916_a_at	CB346827	hypothetical protein LOC100251636	-	7e-27	At5g02450	60S ribosomal protein L36 (RPL36C)	S.X.	H.G.	Please select
0.42	60.1	1616689_at	CF213763	hypothetical protein LOC100248468	-	8e-58	At2g36160	40S ribosomal protein S14 (RPS14A)	S.X.	H.G.	Please select
0.40	57.7	1610354_s_at	CF511640	hypothetical protein LOC100244095	-	1e-50	At3g48930	EMB1080 (embryo defective 1080)	S.X.	H.G.	Please select
0.40	57.7	1610630_at	CB002854	hypothetical protein LOC100260347	-	3e-14	At3g56340	40S ribosomal protein S26 (RPS26C)	S.X.	H.G.	Please select
0.25	30.5	1618365_at	BQ797802	hypothetical protein LOC100250326	-	4e-66	At2g36160	40S ribosomal protein S14 (RPS14A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	4e-76	284	1616712_at	BQ797208	hypothetical protein LOC100252724	-	3e-45	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.02	6e-1	34	1613752_at	CF513775	-	-	8e-1	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	C.G.	S.X.	Please select
0.02	2e+0	32	1621763_s_at	CB980265	hypothetical protein LOC100246745	-	2e-37	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1615841_at	CF203758.1	hypothetical protein LOC100258967	-	8e-15	At4g18060	clathrin binding	C.G.	S.X.	Please select
0.02	2e+0	32	1615330_at	CB339858	hypothetical protein LOC100247382	-	6e+0	At5g20520	WAV2 (WAVY GROWTH 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1611818_at	CB006301	hypothetical protein LOC100264454	-	9e-9	At5g51260	acid phosphatase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1609580_at	CF213100	hypothetical protein LOC100260760	-	5e-10	At2g42750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1609290_at	CF202936.1	-	-	4e+0	At5g64460	-	C.G.	S.X.	Please select
0.02	2e+0	32	1608051_at	CB006301	-	-	9e-9	At5g51260	acid phosphatase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-16	85	Arabidopsis thaliana	At1g74050	843744	60S ribosomal protein L6 (RPL6C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	8e-13	75	Glycine max	Gma.10826.4.S1_at	AI442855	-	-	5e-35	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.12	3e-10	65	Hordeum vulgare	Contig1248_s_at	Contig1248	-	-	3e-8	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please select
0.11	3e-7	57	Oryza sativa	Os02g0591700	AK072777.1	-	Ribosomal protein L6 (Fragment)	9e-6	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	1e-20	101	Populus trichocarpa	PtpAffx.549.1.A1_s_at	CV247729	hypothetical protein	-	1e-31	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	6e-10	65	Triticum aestivum	Ta.28291.1.S1_at	BJ318276	Ribosomal protein L6	-	2e-1	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.10	4e-6	52	Zea mays	Zm.16290.1.S1_at	AI677084	-	-	2e-7	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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