Gene omics information

Query gene ID	1621069_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1621069_at	CD008619	-	-	5e+0	At5g48175	unknown protein	S.X.	H.G.	Please select
0.13	13.3	1607084_at	CF413859	-	-	3e-7	At1g06515	unknown protein	S.X.	H.G.	Please select
0.13	13.3	1615095_at	CB347601	hypothetical protein LOC100266582	-	3e-77	At5g61670	-	S.X.	H.G.	Please select
0.12	12.1	1620220_at	CB345823	hypothetical protein LOC100243115	-	7e-46	At5g54760	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please select
0.05	6.0	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select
0.01	2.1	1607487_at	CD797833	hypothetical protein LOC100247070	-	1e+0	At5g15170	tyrosyl-DNA phosphodiesterase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
6.1	98.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.9	98.6	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
5.8	98.6	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.8	98.6	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
5.0	98.0	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
4.9	97.9	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
4.9	97.9	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1316	1617285_at	CD008619	-	-	5e+0	At5g48175	unknown protein	C.G.	S.X.	Please select
0.10	8e-18	89	1611543_at	CB003748	-	-	7e+0	At5g48595	-	C.G.	S.X.	Please select
0.10	8e-18	89	1607764_at	CB003748	-	-	7e+0	At5g48595	-	C.G.	S.X.	Please select
0.04	4e-4	44	1615564_at	CB002243	-	-	7e+0	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	C.G.	S.X.	Please select
0.04	4e-4	44	1611771_at	CB002243	-	-	7e+0	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	C.G.	S.X.	Please select
0.02	1e-1	36	1611598_at	CB970208	hypothetical protein LOC100244034	-	7e+0	At5g38630	ACYB-1	C.G.	S.X.	Please select
0.02	4e-1	34	1619008_x_at	CF201932.1	-	-	2e-31	At1g48830	40S ribosomal protein S7 (RPS7A)	C.G.	S.X.	Please select
0.02	4e-1	34	1617723_s_at	BQ798805	hypothetical protein LOC100252536	-	2e-15	At5g16130	40S ribosomal protein S7 (RPS7C)	C.G.	S.X.	Please select
0.02	4e-1	34	1612099_at	CD717707	-	-	1e-13	At5g45110	NPR3 (NPR1-LIKE PROTEIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.4023.1.S1_at	BQ453852	-	-	3e+0	At5g48175	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEm0001A07r2_at	HVSMEm0001A07r2	-	-	3e+0	Atcg00440	-	C.G.	S.X.	Please select
0.02	6e-1	36	Oryza sativa	Os03g0748200	AK106146.1	-	Zn-finger-like, PHD finger domain containingprotein	5e-17	At1g54390	PHD finger protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.5833.2.A1_at	CK094577	hypothetical protein	-	1e+0	At2g34270	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.55066.1.S1_s_at	CA672343	-	-	4e+0	At5g27090	AGL54	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.19114.1.A1_at	CO521743	hypothetical protein LOC100272698	-	2e+0	At4g03570	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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