Gene omics information

Query gene ID	1621019_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1621019_at	CF201902.1	-	-	1e+0	At5g65360	histone H3	S.X.	H.G.	Please select
0.80	93.6	1621992_s_at	BQ793824	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	S.X.	H.G.	Please select
0.73	90.8	1617552_at	CF202269.1	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	S.X.	H.G.	Please select
0.50	72.7	1612717_s_at	CA814430	hypothetical protein LOC100259033	-	1e+0	At1g01225	NC domain-containing protein-related	S.X.	H.G.	Please select
0.50	72.7	1607612_at	CF202447.1	hypothetical protein LOC100262044	-	2e-12	At4g31300	PBA1	S.X.	H.G.	Please select
0.48	68.8	1611129_s_at	CB005644	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	98.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.9	97.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
4.9	97.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
4.9	97.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
4.8	97.8	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.3	97.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
4.3	97.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
4.2	97.1	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
4.2	97.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
4.1	96.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	785	1611698_at	CA812037	hypothetical protein LOC100263780	-	2e+0	At5g65360	histone H3	C.G.	S.X.	Please select
0.02	1e-1	36	1612004_at	BQ797336	similar to UBA-like; HSC20, C-terminal oligomerisation	-	2e+0	At1g51730	RWD domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	1621115_at	CF609165	hypothetical protein LOC100262548	-	1e-13	At4g12420	SKU5	C.G.	S.X.	Please select
0.03	4e-1	34	1608497_at	BQ795806	-	-	1e-13	At4g12420	SKU5	C.G.	S.X.	Please select
0.02	2e+0	32	1622422_at	CD800947	hypothetical protein LOC100251499	-	2e-21	At1g72990	BGAL17 (beta-galactosidase 17)	C.G.	S.X.	Please select
0.02	2e+0	32	1621862_at	CF510931	hypothetical protein LOC100267900	-	2e+0	At1g15930	40S ribosomal protein S12 (RPS12A)	C.G.	S.X.	Please select
0.02	2e+0	32	1621383_at	CD718971	-	-	9e-8	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.02	2e+0	32	1620276_at	CF605672	hypothetical protein LOC100253741	-	9e-6	At2g41380	embryo-abundant protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	1620414_at	CF517485	hypothetical protein LOC100247172	-	2e-2	At4g22580	exostosin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g65360	836661	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.17904.2.S1_at	AI736414	-	-	1e-15	At5g46280	DNA replication licensing factor, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig13263_at	Contig13263	-	-	9e-1	At4g19350	EMB3006 (embryo defective 3006)	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	OsAffx.12345.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-7	57	Populus trichocarpa	PtpAffx.202594.1.S1_at	pmrna5194	hypothetical protein	-	1e+0	At3g12650	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.58712.1.S1_at	CA617012	-	-	1e-4	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.893.1.A1_at	AI770864	-	-	3e+0	At2g17500	auxin efflux carrier family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage