Gene omics information

Query gene ID	1621000_at
Gene name	hypothetical protein LOC100245551
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1621000_at	CF209896	hypothetical protein LOC100245551	-	1e+0	At1g06180	ATMYB13 (MYB DOMAIN PROTEIN 13)	S.X.	H.G.	Please select
0.40	57.7	1617573_at	CF405014	hypothetical protein LOC100266600	-	2e-6	At4g28100	unknown protein	S.X.	H.G.	Please select
0.31	41.3	1619627_at	CB976213	hypothetical protein LOC100257983	-	4e-6	At5g04560	DME (DEMETER)	S.X.	H.G.	Please select
0.30	39.4	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.25	30.5	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	S.X.	H.G.	Please select
0.24	28.7	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	S.X.	H.G.	Please select
0.21	24.0	1615121_at	CK138189.1	hypothetical protein LOC100253823	-	1e-9	At3g57780	-	S.X.	H.G.	Please select
0.13	13.3	1618343_at	CB341499	hypothetical protein LOC100242968	-	2e-9	At1g15490	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.12	12.1	1611678_at	CF512915	hypothetical protein LOC100245914	-	2e-3	At1g56580	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	98.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1618275_at	BQ796511	hypothetical protein LOC100243120	-	3e-52	At1g04980	ATPDIL2-2 (PDI-LIKE 2-2)	C.G.	S.X.	Please select
0.03	1e+0	32	1616737_at	CD713024	-	-	5e+0	At3g19663	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1612903_at	CD713024	-	-	5e+0	At3g19663	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1611751_at	CD003966	hypothetical protein LOC100243104	-	5e-7	At1g71480	nuclear transport factor 2 (NTF2) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1607976_at	CD003966	-	-	5e-7	At1g71480	nuclear transport factor 2 (NTF2) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622590_at	CD800779	-	-	2e-1	At5g52130	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622433_at	CB969750	plastid hexose transporter	-	4e-35	At5g16150	PGLCT (PLASTIDIC GLC TRANSLOCATOR)	C.G.	S.X.	Please select
0.02	5e+0	30	1621240_at	CB981857	hypothetical protein LOC100262992	-	3e-15	At5g49060	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620987_at	CB981187	hypothetical protein LOC100249592	-	1e-14	At3g44150	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g06180	837127	ATMYB13 (MYB DOMAIN PROTEIN 13)	member of MYB3R- and R2R3- type MYB- encoding genes	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-3	44	Glycine max	Gma.13092.1.S1_a_at	BU544845	-	-	2e-31	At1g47740	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	EBro08_SQ004_I20_at	EBro08_SQ004_I20	-	-	4e+0	At4g40011	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	Os02g0529266	9630.m03103	-	-	4e+0	Atmg00680	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.86759.1.A1_at	DN494482	-	-	2e-1	At4g27320	universal stress protein (USP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.58861.1.S1_at	CA614009	-	-	7e-1	At5g53905	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.8920.2.S1_a_at	AI833664	-	-	8e-1	At5g15220	ribosomal protein L27 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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