Gene omics information

Query gene ID	1620986_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620986_at	CF372684	-	-	2e-2	At2g31957	LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75)	S.X.	H.G.	Please select
0.50	72.7	1612848_x_at	CF202280.1	-	-	2e-19	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.44	64.1	1619608_at	CF202280.1	-	-	2e-19	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.29	37.7	1608175_at	CF404148	hypothetical protein LOC100265591	-	4e+0	At1g78260	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.29	37.7	1610245_at	CF209798	hypothetical protein LOC100252066	-	1e-20	At2g34430	LHB1B1	S.X.	H.G.	Please select
0.27	34.0	1622344_at	CD715623	hypothetical protein LOC100241684	-	1e+0	At2g03620	magnesium transporter CorA-like family protein (MRS2-5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.6	99.9	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
12.6	99.8	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
12.5	99.8	GSM147703	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	32
12.2	99.8	GSM147679	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	8
11.6	99.7	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26
10.8	99.7	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
10.3	99.6	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
9.0	99.5	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
9.0	99.5	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
7.8	99.3	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-18	89	1609989_at	CF415187	-	-	2e+1	At4g08190	Ras-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.06	2e-2	38	1616828_s_at	CD799685	similar to Os03g0670700	-	1e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.06	2e-2	38	1609653_at	BQ797078	hypothetical protein LOC100244735	-	1e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.09	7e-2	36	1620940_at	CF201899.1	-	-	2e+1	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.04	7e-2	36	1618123_at	CA809099	hypothetical protein LOC100242775	-	1e-3	At5g62020	AT-HSFB2A	C.G.	S.X.	Please select
0.06	7e-2	36	1617526_s_at	CB972978	hypothetical protein LOC100250396	-	8e-1	At2g10920	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	36	1608656_at	CF211834	hypothetical protein LOC100244155	-	2e-7	At2g04240	XERICO	C.G.	S.X.	Please select
0.03	3e-1	34	1619904_at	CB974700	-	-	8e-42	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.03	3e-1	34	1611046_at	CF511863	hypothetical protein LOC100251124 /// hypothetical protein LOC100256282	-	2e+0	At3g16660	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	40	Arabidopsis thaliana	At2g31957	3768007	LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-3	42	Glycine max	Gma.15943.3.A1_at	AW100785	-	-	2e-2	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select
0.07	3e-2	38	Hordeum vulgare	Contig14167_at	Contig14167	-	-	2e-3	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please select
0.06	8e-3	42	Oryza sativa	Os11g0188700	9639.m00801	-	-	2e-1	At4g11870	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-3	44	Populus trichocarpa	PtpAffx.50640.1.A1_at	CV238485	-	-	1e+1	At4g16140	proline-rich family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-2	40	Triticum aestivum	TaAffx.57536.1.S1_at	CA627341	-	-	2e-1	At2g36100	integral membrane family protein	C.G.	S.X.	Please select
0.05	4e-1	34	Zea mays	Zm.9996.1.A1_at	BM350937	hypothetical protein LOC100273898	-	3e-1	At4g02910	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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