Gene omics information

Query gene ID	1620968_at
Gene name	hypothetical protein LOC100262977
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.1	1620968_at	CF513304	hypothetical protein LOC100262977	-	5e+0	Atmg00640	-	S.X.	H.G.	Please select
0.83	94.6	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	S.X.	H.G.	Please select
0.73	90.8	1622765_at	CF405914	-	-	4e+0	At3g59450	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.67	87.9	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	S.X.	H.G.	Please select
0.60	81.9	1608813_s_at	BQ795140	hypothetical protein LOC100255523	-	5e-84	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.57	79.8	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	94.2	GSM436404	V. riparia (VR, PI588259) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	1622094_at	CF515617	hypothetical protein LOC100242331	-	1e+0	At2g44000	-	C.G.	S.X.	Please select
0.02	2e+0	32	1618902_at	CF517328	hypothetical protein LOC100247657	-	9e-2	At4g20290	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617217_at	CB342098	hypothetical protein LOC100241455	-	2e-31	At2g46260	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	1615788_at	CF511058	hypothetical protein LOC100250348	-	2e+0	At5g47170	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1610710_at	CF372224	-	-	4e+0	At5g43690	sulfotransferase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1609002_at	CB971870	-	-	6e-2	At4g24160	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1608787_at	CB971461	hypothetical protein LOC100262851	-	2e-102	At1g79210	20S proteasome alpha subunit B, putative	C.G.	S.X.	Please select
0.02	6e+0	30	1622700_at	CF516801	hypothetical LOC100248029	-	9e-2	At5g55200	co-chaperone grpE protein, putative	C.G.	S.X.	Please select
0.02	6e+0	30	1622813_a_at	CB348240	hypothetical protein LOC100245386	-	4e-11	At1g62780	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	Atmg00640	-	-	encodes a plant b subunit of mitochondrial ATP synthase based on structural similarity and the presence in the F(0) complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	2e-12	73	Glycine max	Gma.4983.1.S1_at	BG156786	-	-	2e-25	At4g33210	F-box family protein (FBL15)	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig12143_at	Contig12143	-	-	6e+0	At4g38150	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	Os02g0448500	9630.m02342	-	-	4e-1	At3g57860	UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	7e-34	145	Populus trichocarpa	PtpAffx.24361.1.S1_at	CV263076	f-box family protein	-	2e-44	At4g33210	F-box family protein (FBL15)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.8116.1.S1_at	CA635233	-	-	6e-1	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.02	5e-1	34	Zea mays	Zm.15742.1.A1_at	CD446346	-	-	8e+0	Atmg00820	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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