Gene omics information

Query gene ID	1620959_s_at
Gene name	myb-relared transcription factor VvMYBA2
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	S.X.	H.G.	Please select
0.83	94.6	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	S.X.	H.G.	Please select
0.77	92.3	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.73	90.8	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.63	84.3	1617171_s_at	AF000371.1	UDP glucose:flavonoid 3-o-glucosyltransferase	-	1e-2	At5g17030	UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)	S.X.	H.G.	Please select
0.56	79.4	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.1	100.0	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
24.7	100.0	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
22.3	100.0	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
21.8	100.0	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
20.9	99.9	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
19.9	99.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
16.8	99.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
13.0	99.8	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.4	99.7	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.6	99.5	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	2e-163	573	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	C.G.	S.X.	Please select
0.03	3e-1	34	1614442_at	CB970667	hypothetical protein LOC100253371	-	7e-6	At1g12830	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1608767_at	CF202491.1	-	-	2e-2	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	C.G.	S.X.	Please select
0.01	1e+0	32	1620811_at	BQ792368	-	-	7e-11	At5g06043	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1619272_at	CF373376	hypothetical protein LOC100265908	-	1e-4	At1g29395	COR414-TM1	C.G.	S.X.	Please select
0.03	1e+0	32	1618824_at	BQ799714	hypothetical protein LOC100268064	-	2e-4	At4g09890	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1617618_at	CD798691	-	-	7e+0	At3g43400	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select
0.04	1e+0	32	1617038_at	CA814579	-	-	2e+0	At5g02050	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1612953_at	CF606754	hypothetical LOC100254354	-	2e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g19855	832106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	HgAffx.24117.1.S1_at	CB279335	-	-	2e-1	At1g23570	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	HVSMEk0004C11r2_s_at	HVSMEk0004C11r2	-	-	2e+0	At1g35365	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	32	Oryza sativa	Os04g0256900	9632.m01675	-	-	4e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.294.3.S1_s_at	BP931702	f-box family protein	-	2e+0	At4g28170	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	Ta.4707.1.S1_at	BJ270422	-	-	1e+1	At5g49350	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage