Gene omics information

Query gene ID	1620954_at
Gene name	hypothetical protein LOC100242907
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.8	1620954_at	CF513203	hypothetical protein LOC100242907	-	7e-2	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	S.X.	H.G.	Please select
0.87	95.2	1615603_at	CB346190	-	-	2e-1	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	S.X.	H.G.	Please select
0.85	94.9	1619772_at	CF205273.1	hypothetical protein LOC100260458	-	2e+0	At3g05070	-	S.X.	H.G.	Please select
0.80	93.6	1615118_at	CF373171	hypothetical protein LOC100241584	-	1e+0	At4g36620	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.80	93.6	1615124_at	CF514122	hypothetical protein LOC100258563	-	8e-5	At1g71691	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.77	92.3	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	S.X.	H.G.	Please select
0.76	91.5	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	S.X.	H.G.	Please select
0.73	90.8	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	S.X.	H.G.	Please select
0.73	90.8	1613573_at	CF609267	hypothetical protein LOC100260045	-	6e-33	At1g53860	remorin family protein	S.X.	H.G.	Please select
0.71	89.5	1609418_s_at	CF568955	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	99.2	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.7	99.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-4	44	1609757_s_at	CF517381	hypothetical protein LOC100244902	-	1e-8	At5g20700	senescence-associated protein-related	C.G.	S.X.	Please select
0.04	1e-3	42	1618582_at	CF415097	hypothetical protein LOC100254493	-	4e-3	At2g22100	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	2e-2	38	1615898_at	CF404727	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	3e-1	34	1620297_at	CD717258	-	-	1e-13	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1616498_at	CD717258	hypothetical protein LOC100263757	-	1e-13	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1622634_s_at	BQ794921	similar to 40S ribosomal protein S8	-	7e-16	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select
0.02	1e+0	32	1622517_at	CB970523	UPF0497 membrane protein 11	-	4e-1	At1g17200	integral membrane family protein	C.G.	S.X.	Please select
0.01	1e+0	32	1619852_s_at	CF207182	hypothetical protein LOC100265737	-	4e-12	At4g14040	SBP2 (SELENIUM-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+0	32	1619249_at	CF211945	-	-	5e-6	At2g17800	ARAC1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-2	38	Arabidopsis thaliana	At4g04900	825829	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	7e-9	61	Glycine max	GmaAffx.43241.1.A1_at	CD390360	-	-	7e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.05	4e-2	38	Hordeum vulgare	HW02P03u_x_at	HW02P03u	-	-	5e-2	At3g12510	unknown protein	C.G.	S.X.	Please select
0.04	9e-3	42	Oryza sativa	OsAffx.24683.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-6	54	Populus trichocarpa	PtpAffx.209684.1.S1_at	pmrna19114	hypothetical protein	-	2e+0	At1g03982	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.4189.1.S1_at	CA637767	-	-	8e-1	At5g06990	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.49.1.S1_at	D31906.1	mgp2 GTP-binding protein	-	2e-46	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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