CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620940_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 79.8 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein S.X. H.G.
0.50 72.7 1618231_at AF141642.1 - - 8e-50 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) S.X. H.G.
0.46 66.5 1608165_at CF205571.1 - - 2e+0 At1g03660 - S.X. H.G.
0.46 66.5 1617743_at CF201643.1 - - 2e-12 At1g52870 peroxisomal membrane protein-related S.X. H.G.
0.44 64.1 1611368_at CF203753.1 - - 6e-18 At4g35090 CAT2 (CATALASE 2) S.X. H.G.
0.13 13.3 1620723_at CF204991.1 - - 2e-23 At5g52240 MSBP1 (membrane steroid binding protein 1) S.X. H.G.
0.11 11.3 1615055_at CK138121.1 - - 3e-19 At3g48030 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.5 100.0 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
29.9 100.0 GSM436421 V. riparia (VR, PI588259) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
25.9 100.0 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
15.7 99.9 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
12.4 99.8 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
11.5 99.7 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
8.4 99.4 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.4 99.2 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.3 95.2 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 30 1621035_at CB006610 hypothetical protein LOC100249467 - 4e-18 At1g04210 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.05 1e+0 30 1612833_at CF211047 hypothetical protein LOC100247455 - 9e-17 At5g10460 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.05 1e+0 30 1612451_at CF609753 monodehydroascorbate reductase - 3e-22 At3g52880 monodehydroascorbate reductase, putative C.G. S.X.
0.04 1e+0 30 1609005_at BQ800587 hypothetical LOC100246376 - 3e-1 At3g13782 NAP1 C.G. S.X.
0.02 1e+0 30 1608434_at CB006610 - - 4e-18 At1g04210 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.04 5e+0 28 1620852_at CF212335 - - 5e+0 At4g35190 unknown protein C.G. S.X.
0.08 5e+0 28 1618739_x_at CF202630.1 - - 4e-1 At4g39670 glycolipid binding / glycolipid transporter C.G. S.X.
0.03 5e+0 28 1618169_at CB001607 - - 6e+0 At3g09975 unknown protein C.G. S.X.
0.05 5e+0 28 1616497_at CB981932 hypothetical protein LOC100262039 - 2e-1 At1g04260 MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+1 28 Arabidopsis thaliana At5g66990 836834 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.07 1e-1 36 Glycine max HgAffx.4308.1.S1_at CD749116 - - 1e+1 At5g64990 AtRABH1a (Arabidopsis Rab GTPase homolog H1a) C.G. S.X.
0.04 8e+0 28 Hordeum vulgare Contig23540_at Contig23540 - - 2e+1 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.05 8e+0 30 Oryza sativa Os09g0395000 9637.m01974 - - 1e+1 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.04 4e-1 34 Populus trichocarpa PtpAffx.163145.1.S1_at BU871945 hypothetical protein - 3e-5 At4g39870 - C.G. S.X.
0.07 4e+0 30 Triticum aestivum TaAffx.105690.1.S1_at CA731068 - - 9e+0 At4g10680 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.08 2e+0 30 Zea mays ZmAffx.442.1.A1_at AI677001 hypothetical protein LOC100276384 - 2e+0 At5g41401 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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