CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620932_at

Gene name hypothetical protein LOC100259549

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620932_at CA817618 hypothetical protein LOC100259549 - 8e-28 At5g26980 SYP41 (SYNTAXIN OF PLANTS 41) S.X. H.G.
0.67 87.9 1610712_s_at BQ800542 hypothetical protein LOC100261124 - 3e-1 At1g30475 - S.X. H.G.
0.57 79.8 1618984_at CF206626.1 hypothetical protein LOC100266739 - 9e-8 At1g77350 unknown protein S.X. H.G.
0.46 66.5 1615947_at CB973630 hypothetical protein LOC100263087 - 6e-41 At5g26710 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative S.X. H.G.
0.44 64.1 1609543_at CB348420 hypothetical protein LOC100263184 - 2e-105 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) S.X. H.G.
0.36 50.7 1618212_at CB977905 hypothetical protein LOC100242541 - 2e-6 At5g37475 translation initiation factor-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 98.5 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5 97.5 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4 97.3 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0 96.7 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8 96.4 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3 95.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.6 92.5 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-4 44 1609046_at CB971729 hypothetical protein LOC100256085 - 1e-13 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.02 2e-1 36 1617206_s_at CB340600 hypothetical protein LOC100244962 - 8e-1 At5g67600 unknown protein C.G. S.X.
0.02 2e-1 36 1613642_at CB002851 hypothetical protein LOC100244962 - 9e-18 At1g08380 PSAO (photosystem I subunit O) C.G. S.X.
0.02 2e-1 36 1611374_at CF211300 - - 4e-43 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
0.02 7e-1 34 1620334_at CF205130.1 - - 3e-81 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
0.02 7e-1 34 1620071_at BQ800214 hypothetical protein LOC100249385 - 3e-11 At5g27320 GID1C (GA INSENSITIVE DWARF1C) C.G. S.X.
0.01 7e-1 34 1616334_a_at CB917599 - - 0 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.02 7e-1 34 1615565_x_at CF205130.1 - - 3e-81 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
0.02 7e-1 34 1615192_x_at CF206355.1 similar to polyubiquitin - 9e-38 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 8e-28 125 Arabidopsis thaliana At5g26980 832756 SYP41 (SYNTAXIN OF PLANTS 41) member of SYP4 Gene Family - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.52735.1.S1_at AW185054 - - 2e-1 At5g41860 unknown protein C.G. S.X.
0.16 6e-21 101 Hordeum vulgare Contig17599_at Contig17599 - - 1e-11 At4g02195 SYP42 (SYNTAXIN OF PLANTS 42) C.G. S.X.
0.07 7e-2 40 Oryza sativa Os06g0116300 NM_185439.1 - Syntaxin, N-terminal domain containing protein 2e-12 At5g26980 SYP41 (SYNTAXIN OF PLANTS 41) C.G. S.X.
0.31 6e-51 202 Populus trichocarpa PtpAffx.210865.1.S1_at pmrna21340 hypothetical protein - 5e-35 At5g26980 SYP41 (SYNTAXIN OF PLANTS 41) C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.25867.1.S1_at CD453732 - - 2e+0 At4g02195 SYP42 (SYNTAXIN OF PLANTS 42) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.137.1.A1_at AI667708 Hypothetical protein LOC100192022 - 8e-1 At2g45130 SPX3 (SPX DOMAIN GENE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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