Gene omics information

Query gene ID	1620897_at
Gene name	similar to F-box-containing protein 2
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620897_at	CF603365	similar to F-box-containing protein 2	-	3e-4	At1g06110	SKIP16 (SKP1/ASK-interacting protein 16)	S.X.	H.G.	Please select
0.57	79.8	1614838_at	CB977099	hypothetical protein LOC100244335	-	1e-4	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.55	77.3	1612774_at	CF210198	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	S.X.	H.G.	Please select
0.43	61.5	1614708_at	CF511068	hypothetical protein LOC100248174	-	2e-55	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	S.X.	H.G.	Please select
0.40	57.7	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	S.X.	H.G.	Please select
0.36	50.7	1607886_at	CF604620	hypothetical protein LOC100255368	-	1e-9	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	97.1	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1618770_at	CF519107	-	-	3e-1	At5g41720	-	C.G.	S.X.	Please select
0.03	1e+0	32	1617394_at	CD718331	-	-	1e+0	At3g46090	ZAT7	C.G.	S.X.	Please select
0.02	1e+0	32	1617063_at	CB969729	hypothetical protein LOC100245032	-	2e-10	At5g04590	SIR	C.G.	S.X.	Please select
0.02	1e+0	32	1614707_at	BQ799313	hypothetical protein LOC100251865	-	6e-41	At3g46970	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	C.G.	S.X.	Please select
0.03	1e+0	32	1613566_at	CD718331	-	-	1e+0	At3g46090	ZAT7	C.G.	S.X.	Please select
0.02	5e+0	30	1621098_at	CB975046	hypothetical protein LOC100245221	-	8e-13	At1g16900	sugar binding / transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	5e+0	30	1620350_at	CF206244.1	-	-	7e-27	At4g15545	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1618539_at	CF513048	hypothetical protein LOC100267633	-	1e-2	At2g41950	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1617393_s_at	CB917014	hypothetical protein LOC100252741	-	3e-29	At4g15545	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-4	46	Arabidopsis thaliana	At1g06110	837120	SKIP16 (SKP1/ASK-interacting protein 16)	F:protein binding;P:biological_process unknown;C:SCF ubiquitin ligase complex;BOMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	6e-6	52	Glycine max	GmaAffx.91137.1.S1_at	CF806862	-	-	5e+0	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select
0.04	7e+0	30	Hordeum vulgare	HA15K23r_at	HA15K23r	-	-	2e+0	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.23425.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-5	50	Populus trichocarpa	PtpAffx.85534.1.S1_at	CV228431	hypothetical protein	-	2e-1	At1g06110	SKIP16 (SKP1/ASK-interacting protein 16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+1	30	Triticum aestivum	TaAffx.78088.1.S1_at	CA737721	-	-	2e-1	At1g11820	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.10249.1.A1_at	BM497740	-	-	1e-1	At2g35460	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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