Gene omics information

Query gene ID	1620881_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.0	1620881_at	CF568956	-	-	3e-4	At5g54900	ATRBP45A (RNA-binding protein 45A)	S.X.	H.G.	Please select
0.23	27.5	1608903_at	CF516993	hypothetical protein LOC100245579	-	9e-10	At3g14100	oligouridylate-binding protein, putative	S.X.	H.G.	Please select
0.17	18.2	1620870_s_at	BQ794210	hypothetical protein LOC100251175	-	3e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.15	15.6	1613162_at	CF514736	hypothetical protein LOC100261444	-	3e-20	At4g26230	60S ribosomal protein L31 (RPL31B)	S.X.	H.G.	Please select
0.14	14.4	1614188_at	CF208361	hypothetical protein LOC100243205	-	2e-25	At3g10850	GLY2	S.X.	H.G.	Please select
0.12	12.1	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.10	10.3	1608087_s_at	CF568810	glyceraldehyde-3-phosphate dehydrogenase	-	2e-103	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	0	749	1608677_at	CB977949	hypothetical protein LOC100258930	-	3e-22	At3g19130	ATRBP47B (RNA-binding protein 47B)	C.G.	S.X.	Please select
0.01	3e-1	34	1622249_at	CA817903	glycolate oxidase-like	-	6e-153	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.03	3e-1	34	1610454_s_at	CF207579	hypothetical protein LOC100245034	-	1e-47	At5g62740	band 7 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1622743_at	BQ793332	hypothetical protein LOC100264845	-	8e-11	At3g06270	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1619161_at	CD802334	hypothetical protein LOC100262369	-	4e-3	At3g15300	VQ motif-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622214_at	BQ794441	similar to NADH-ubiquinone oxidoreductase-related	-	5e-43	At3g62790	NADH-ubiquinone oxidoreductase-related	C.G.	S.X.	Please select
0.02	5e+0	30	1621533_at	CF514195	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	C.G.	S.X.	Please select
0.02	5e+0	30	1621364_s_at	CF511664	hypothetical protein LOC100252604	-	2e-12	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	C.G.	S.X.	Please select
0.02	5e+0	30	1618946_at	CB972077	hypothetical protein LOC100247396	-	2e+0	At1g47290	AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-4	46	Arabidopsis thaliana	At5g54900	835581	ATRBP45A (RNA-binding protein 45A)	F:RNA binding;P:unknown;C:unknown;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	7e-15	81	Glycine max	GmaAffx.93061.1.S1_at	CF808786	-	-	5e-6	At3g19130	ATRBP47B (RNA-binding protein 47B)	C.G.	S.X.	Please select
0.11	3e-8	57	Hordeum vulgare	Contig3033_at	Contig3033	-	-	9e-4	At1g47500	ATRBP47C' (RNA-binding protein 47C')	C.G.	S.X.	Please select
0.11	4e-17	89	Oryza sativa	Os09g0462700	AK067260.1	-	-	1e-21	At1g47500	ATRBP47C' (RNA-binding protein 47C')	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	2e-5	50	Populus trichocarpa	PtpAffx.158349.2.S1_s_at	AJ776596	hypothetical protein	-	4e-4	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	4e-6	52	Triticum aestivum	Ta.3080.1.S1_x_at	CK214460	-	-	2e-1	At5g11412	nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.05	3e-11	67	Zea mays	Zm.5853.1.A1_at	AI649903	hypothetical protein LOC100193409	-	1e-2	At1g47500	ATRBP47C' (RNA-binding protein 47C')	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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