Gene omics information

Query gene ID	1620870_s_at
Gene name	hypothetical protein LOC100251175
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1620870_s_at	BQ794210	hypothetical protein LOC100251175	-	3e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.73	90.8	1611616_at	CF406000	hypothetical protein LOC100250213	-	8e-12	At2g30530	unknown protein	S.X.	H.G.	Please select
0.73	90.8	1609850_at	CB979570	hypothetical protein LOC100244857	-	3e-7	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	S.X.	H.G.	Please select
0.67	87.9	1609948_at	BQ793462	hypothetical protein LOC100259405	-	3e-1	At3g21710	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1614891_s_at	BQ792530	hypothetical protein LOC100251643	-	2e-25	At3g56680	nucleic acid binding	S.X.	H.G.	Please select
0.40	57.7	1621094_s_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	1180	1609433_s_at	CA807981	similar to Os03g0576600	-	3e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.28	9e-152	535	1610009_at	CF205831.1	-	-	2e-11	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	C.G.	S.X.	Please select
0.22	2e-106	385	1620798_s_at	BQ800340	hypothetical protein LOC100251175	-	1e-5	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.36	3e-59	228	1618515_s_at	CB344557	hypothetical protein LOC100254426	-	9e-24	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.30	2e-44	178	1618578_at	CF203270.1	-	-	5e-12	At3g05540	-	C.G.	S.X.	Please select
0.02	1e-2	40	1613018_at	CB971117	hypothetical protein LOC100264115	-	7e-2	At3g06280	-	C.G.	S.X.	Please select
0.01	2e-1	36	1618351_at	BQ792898	hypothetical protein LOC100259435	-	3e-14	At3g56510	TBP-binding protein, putative	C.G.	S.X.	Please select
0.02	2e-1	36	1613526_at	CF568881	-	-	2e-88	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.01	8e-1	34	1613016_at	CB979782	-	-	3e-2	At3g10580	myb family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	3e-18	93	Arabidopsis thaliana	At3g16640	820916	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	2e-45	184	Glycine max	GmaAffx.33954.1.S1_at	AW568231	-	-	2e-14	At3g05540	-	C.G.	S.X.	Please select
0.14	1e-10	67	Hordeum vulgare	Contig97_s_at	Contig97	translationally-controlled tumor protein homolog	-	2e-8	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.24	1e-28	129	Oryza sativa	Os11g0660500	D12626.1	-	Translationally controlled tumor protein familyprotein	2e-13	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-54	214	Populus trichocarpa	Ptp.5471.1.S1_s_at	CV270452	hypothetical protein	-	7e-34	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-13	77	Triticum aestivum	Ta.20633.1.S1_at	CA485234	-	-	8e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.18	1e-9	63	Zea mays	Zm.6189.1.A1_a_at	AF548024.1	hypothetical protein LOC100193012	-	1e-3	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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